Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00949 ATGTGGAAGGTTCCGGCATATAAAAAGAGTTATTCGCAACCTTCAATTGAATTGGTTGTAATTGACAAAGACGGAACTCGGATCCATTGTTTCATCCGGGCTGTCCATTACCGGCTTTTTGAACCTATCCTTGAGGAGGGAAAGGTGTTTGTTGTGGGCAACTTTGCAATGGACTCAAACACACAGAAATACAGACCCACTAAGCATAGCATGCGGATCATATTTAAGAGGGACACATTGGTCTCTGGTGCTGATGACATGGACATTCCAATTGAATCATTTGATTTCGTGGCAACCAAGGAAATCTTATCATCCGTTAGGGATGACTTACATCTTATTGATTTTGTTGGTTTACTGTCCGCAAAGAGTGAGTTGATTCCTTTTCAAAATAGAAATCGGAAGTCACATTACATGAAAATCGAGCTTGATGATCTGAGCGAGCGGCTTTCATGCACCTTGTGGGAAAATTATGCGTCTGATTTGGTTAATCTTCTTGATGCCAACGAGGCCACCAAATTTATAATTGTGCTCCAGTTTGCCAAGATGAAGTTCTACAATGGTGTTATGACTATAACCAACACAAACTACACCACAAGACTCATGGTTAATGCTGACCTTGAAGTGGTTAAGAAATTCCGCCAAAGGCTGATTCAACTTGGTAGCAAGCACAACACCAGCGTTGAGGTTATTGGGCAGGTAGTGAGGCATTCTCCATCTGAAGATTTTCTCAGCCTTATCCCATATGCCACCATACATCAAATAAAGGAAACTCTTGAGAAATCAACCTTTGTGACATGTGGAACCATCACCGACATTGACAGAGATCATGCATGGTGGTACAAGGCTTGCATGCATTGCACACAAGGACTGGAGGCACTTACTGACCAATTTTATTGTCCAAAATGCGATGTTTACTCCTCAGTTTTTGCCCCCAGGTTTTGCATTCAGGTTCGTGTTGGTGACGACTTAGATACCGCAACTTTTGTGCTATTTGAAAATTGTGCGGCAAAGTTCTTAGGACTATCTACCGCTGAGATCCGCACTAGGCTTCTTGCTAGGGGATATGAAAGAGACCATTTCCCAGATGAGCTTAATGCACTGATTGGGAGAACACTACTATTCAAGCTTACTGTTAGGCATGATAGCTTAAATAAATTTCAGCCGTGCGTGATTACCGTCTCAAGGATATGTTCTGACCTAGAGATTATCTCCTCCCTTGCTTTAGACAAGAACATTAAATTGAAGTTGACCACGGCTGCTGACCTTCGAAGCGGTGACTTGGATGGGGCTGGGAGCATACTCGGCGTCTCTGGTTCCACCACCACTCCAAGTCCCAGGTCCGCTGCTGCTCCTGGTGACGGTGCTACCCACATGATTACACGTACTCCTGTTAAGCGGGTTTGCATTAGATCCGGTGACGACTGCTCCTCCCGTGCCACACCATCTGCCTCTAAGAGTCTTCTCCCTGCGTTTGAGAGCTGCGTCCTAGGAAATGCCACCGACCCTGATGCAGGGGACATATGA 1524 0.4488 MWKVPAYKKSYSQPSIELVVIDKDGTRIHCFIRAVHYRLFEPILEEGKVFVVGNFAMDSNTQKYRPTKHSMRIIFKRDTLVSGADDMDIPIESFDFVATKEILSSVRDDLHLIDFVGLLSAKSELIPFQNRNRKSHYMKIELDDLSERLSCTLWENYASDLVNLLDANEATKFIIVLQFAKMKFYNGVMTITNTNYTTRLMVNADLEVVKKFRQRLIQLGSKHNTSVEVIGQVVRHSPSEDFLSLIPYATIHQIKETLEKSTFVTCGTITDIDRDHAWWYKACMHCTQGLEALTDQFYCPKCDVYSSVFAPRFCIQVRVGDDLDTATFVLFENCAAKFLGLSTAEIRTRLLARGYERDHFPDELNALIGRTLLFKLTVRHDSLNKFQPCVITVSRICSDLEIISSLALDKNIKLKLTTAADLRSGDLDGAGSILGVSGSTTTPSPRSAAAPGDGATHMITRTPVKRVCIRSGDDCSSRATPSASKSLLPAFESCVLGNATDPDAGDI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00949 507 CDD RPA1_DBD_C 251 384 IPR013955 -
Adu10g00949 507 SUPERFAMILY Nucleic acid-binding proteins 15 86 IPR012340 -
Adu10g00949 507 SUPERFAMILY Nucleic acid-binding proteins 247 395 IPR012340 -
Adu10g00949 507 CDD RPA1_DBD_B_like 114 217 - -
Adu10g00949 507 Gene3D - 244 405 IPR012340 -
Adu10g00949 507 MobiDBLite consensus disorder prediction 436 456 - -
Adu10g00949 507 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 15 335 - -
Adu10g00949 507 Gene3D - 87 227 IPR012340 -
Adu10g00949 507 Gene3D - 1 83 IPR012340 -
Adu10g00949 507 Pfam Domain of unknown function DUF223 17 98 IPR003871 -
Adu10g00949 507 PANTHER REPLICATION FACTOR A 1, RFA1 15 335 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu10g00949 507 Pfam Replication factor-A C terminal domain 264 396 IPR013955 -
Adu10g00949 507 SUPERFAMILY Nucleic acid-binding proteins 94 215 IPR012340 -
Adu10g00949 507 CDD RPA1_DBD_A_like 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00949 Adu-Chr10 15807328 15810014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00949 22 393 Core DNA Replication Machinery Family AT5G08020 21.964 6.49e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00949 - - adu:110276766 962.214