Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00947 ATGACATCTCTCTCTAAGCTCTTCAACCGTCTTTGCGGCAGAATAATAATCCTATTAGCATACCTGCTATTACAACTAATCATCTTAATTAAGAAGCTAGAATCATCATTTACAGGTCCAATTGCAAAATTACAGTACCTGAGATTCATCGAAGAGAAGAACCCAACGATTCCGTACACAAATGAGATGAAGCCACGTCACGTGCAGTGCACGGTGTGTTTGTCGGAGTTCAAGGAAGAGGAGAAAGTGAGGAGCCTTAAATGCCAACACGTGTTCCACAGGGACTGCTTGGACACGTGGCTGCAAGAATACCGCGCCACGTGTCCGTTGTGTCGG 336 0.4524 MTSLSKLFNRLCGRIIILLAYLLLQLIILIKKLESSFTGPIAKLQYLRFIEEKNPTIPYTNEMKPRHVQCTVCLSEFKEEEKVRSLKCQHVFHRDCLDTWLQEYRATCPLCR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00947 112 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Adu10g00947 112 SUPERFAMILY RING/U-box 46 112 - -
Adu10g00947 112 PANTHER - 1 112 - -
Adu10g00947 112 SMART ring_2 70 111 IPR001841 -
Adu10g00947 112 CDD mRING-H2-C3H2C2D_ZSWM2 69 112 - -
Adu10g00947 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 112 IPR013083 -
Adu10g00947 112 Pfam Ring finger domain 69 112 IPR001841 -
Adu10g00947 112 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00947 Adu-Chr10 15756527 15756862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00947 69 112 C3H Transcription Factor Family AT1G15100 59.091 2.42e-15 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00947 K16282 - gmx:102661897 126.716
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g03177 03 117285406 117291018 Adu10g00947 10 15756527 15756862 PCT