Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00876 ATGGATCAGAAATTTGATTCAGTGAAAGACCTCTCTCTCAATTCAGAGAAGAACTGGTGCATTAAAGTGAGAATTTTGCGGATGTGGAAGGTTCCAGCATATGAAAAGAGTTATTCGCAACCTTCAATTGAATTGGTTGTAATTGACAAAGACGGAACTCGGATCCATTGTTTCATCCGGGCTGTCCATTATCGGCTTTTTGAACCTATCCTTGAGGAGGGAAAGGTGTTTGTTGTGGGCAACTTTGCAATGGACTCAAACACACAGAAATACAGACCCACCAAGCATAGCATGCGGATCATATTTAAGAGGGACACATTGGTGTCTGGTGCTGATGACATGGACATTCCTATTGAATCATTTGATTTCGTGGCAACCAAGGAAATCTTATCATCCGTTAGGGATGACTTACATCTTATTGATTTTGTTGGTTTGTTGTCCGCAAAGAGTGAGTTGATTCCTTTTCAGAATAGAAATCGGAAGTCACATTACATGAAAATCGAGCTTGATGATCTGAGCGAGCGGCTTTCATGCACCTTGTGGGAAAATTATGCGTCTGATCTGGTTAATCTTCTTGATGCCAACGAGGCCACCGAATTTATTATTGTGCTCCAATTTGCCAAGATGAAGTTCTACAATGGTGTTATGACTATAACCAACACAAACTACACCACAAGACTCATGGTTAATGCTGACCTTGAAGTGGTTAAGAAATTCCGTCAAAGGCTGATTCGACTTGGTAGCAAGCACAGCACCAGCGTTGAGGTTATTGGGCAGGTAGTGAGGCATTCTCCATCTGAGGATTTTCTCAGCCTTACCCCATATGCCACCATACATCAAATAAAGGAAACTCTTGAGAAATCAACCTTTGTGACATGTGGAACCATCACCGACATTGACAGAGATCATGCATGGTGGTACAAGGCTTGCAGGCATTGCACACAAGGACTGGAGGCACTTGCTGACCAATTTTATTGCCCAAAATGCGATCTTTACTCCTCAGTTTTTGCCCCCAGGTTCTGCATTCAGGTTCGTGTTGGTGACGACTCAGATACCGCAACTTTTGTGCTATTTGAGAATTGTGCGGCAAAGTTCTTAGGACTATCTGCCGCTGAGATCCGCACTAGGCTTCTTGCTAGGGGATATGGAAGAGACCATCTCCCAGATGAGCTTAATGCACTGATTGGGAGAACACTACTATTCAAGCTTACTGTTAGGCATGATAGCTTAAATAAATTTCAGCCGTGCGTGATTACCGTCTCAAGGATATGTTCTGACCCAGATATTATCTCCTCCCTTGCTTTAGACAAGAACATTAAATTGGATGTGCTTCAGAAGTTGACCACGGCTGCTGACCTTCGAAGCGGTGACTTGGATGGGGCTGGGAGCATACTTGGCATCCCTGGTTCAACCGCCACTCCAAGTCCCGGGTCCGCTGCTGCTCCTGGTGACGGTGCTGCACACATGATTACACGTACTCCTGTTAAGCGGGTTTGCATTAGATCCGGTGATGACTGCTCCTCCCGTGCCACACCATCTGCCTCCAAGAGTCTTCTCCCTGCATTTGAGAGCTGCGTCCCAGGGAATGCCACCAACCCTGATGCAAGGGACATATGA 1617 0.4539 MDQKFDSVKDLSLNSEKNWCIKVRILRMWKVPAYEKSYSQPSIELVVIDKDGTRIHCFIRAVHYRLFEPILEEGKVFVVGNFAMDSNTQKYRPTKHSMRIIFKRDTLVSGADDMDIPIESFDFVATKEILSSVRDDLHLIDFVGLLSAKSELIPFQNRNRKSHYMKIELDDLSERLSCTLWENYASDLVNLLDANEATEFIIVLQFAKMKFYNGVMTITNTNYTTRLMVNADLEVVKKFRQRLIRLGSKHSTSVEVIGQVVRHSPSEDFLSLTPYATIHQIKETLEKSTFVTCGTITDIDRDHAWWYKACRHCTQGLEALADQFYCPKCDLYSSVFAPRFCIQVRVGDDSDTATFVLFENCAAKFLGLSAAEIRTRLLARGYGRDHLPDELNALIGRTLLFKLTVRHDSLNKFQPCVITVSRICSDPDIISSLALDKNIKLDVLQKLTTAADLRSGDLDGAGSILGIPGSTATPSPGSAAAPGDGAAHMITRTPVKRVCIRSGDDCSSRATPSASKSLLPAFESCVPGNATNPDARDI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00876 538 Gene3D - 270 430 IPR012340 -
Adu10g00876 538 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 372 - -
Adu10g00876 538 SUPERFAMILY Nucleic acid-binding proteins 273 423 IPR012340 -
Adu10g00876 538 Pfam Domain of unknown function DUF223 44 124 IPR003871 -
Adu10g00876 538 Pfam Replication factor-A C terminal domain 291 423 IPR013955 -
Adu10g00876 538 CDD RPA1_DBD_A_like 20 108 - -
Adu10g00876 538 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Adu10g00876 538 SUPERFAMILY Nucleic acid-binding proteins 121 242 IPR012340 -
Adu10g00876 538 Gene3D - 3 110 IPR012340 -
Adu10g00876 538 PANTHER REPLICATION FACTOR A 1, RFA1 20 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu10g00876 538 Gene3D - 114 254 IPR012340 -
Adu10g00876 538 CDD RPA1_DBD_B_like 141 244 - -
Adu10g00876 538 CDD RPA1_DBD_C 278 411 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00876 Adu-Chr10 12971708 12974479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00876 11 420 Core DNA Replication Machinery Family AT5G08020 21.810 4.33e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00876 - - adu:110276766 1047.34