Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00862 ATGTCCGCTCCCATAAATCAGTCTGAGGATCCGAATTCTCCGGATCCGAATTGGAATTCGGATCCACAACTTCCGCTCCGTAACCTCGAACAGATCCGAACCCGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCACCTCCAACAACCCTCTCTCCGGCGACCAATCCGCCGCCGTCTCCGATCAAATCGCCTCCGTCATCCACCAAAGCATCGCCCACGCCTCCGCCCTCGTCTCCTACTCTAAAACCTTCCACCCGCCGGGTTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGACCTATCAGCCAGTGTCGAGAAACTCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGACGAGGACACCGCAACCGATGAGTTTGCCGATAGCGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACCTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTGCGCATGCATATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCACTCGCGAAGCCGGAGAATCCGTCGTCCGCCGCCGTGCGCAGCCGGTTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCAGCGCTTCAGGCCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTATTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAGAATTGCGGAGAGTCGAAGTGGAAGTGCTCTTGTGGGACCACGTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGACGATAATAAGGGCAAGCATGTGCAGGAAGATGATGATAGTGATCATTTTAGTGATTTGCCTGATGGCTTTTTTGATGATTTGGGTGATTTGAGCTCTTTAGGGTTTCCCTTAATTTAA 999 0.5445 MSAPINQSEDPNSPDPNWNSDPQLPLRNLEQIRTRLDSLHRFLSESITSNNPLSGDQSAAVSDQIASVIHQSIAHASALVSYSKTFHPPGSTPAAAPPLPRVDLSASVEKLKRASDLKIEPPDEDTATDEFADSDEIVELDAVEILAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENPSSAAVRSRFSCPFEGCNRNKNHQRFRPLKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEDDNKGKHVQEDDDSDHFSDLPDGFFDDLGDLSSLGFPLI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00862 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Adu10g00862 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 12 308 - -
Adu10g00862 332 SMART c2h2final6 151 173 IPR013087 -
Adu10g00862 332 SMART c2h2final6 198 231 IPR013087 -
Adu10g00862 332 SMART c2h2final6 236 257 IPR013087 -
Adu10g00862 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Adu10g00862 332 MobiDBLite consensus disorder prediction 1 26 - -
Adu10g00862 332 Gene3D Classic Zinc Finger 234 284 - -
Adu10g00862 332 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Adu10g00862 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 12 308 IPR044300 GO:0010044|GO:0010447
Adu10g00862 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Adu10g00862 332 Gene3D Classic Zinc Finger 151 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00862 Adu-Chr10 12670167 12671590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00862 134 292 C2H2 Transcription Factor Family AT1G34370 63.190 3.75e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu10g00862 zf-C2H2 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00862 - - cam:101491258 384.415