Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00704 ATGATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCAATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAAGAAACTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTGTTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCCGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCGGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGCGCACAGAATGGAATTCCTATTCCTGAAGGCCCTTCTGAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCAATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGTGAAAGTGGTTCCAGTAGAAGAGAGCAGTATGTCAGAGCAAACTGGGGTAGCTGGAGCTGAAAGCGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAATGACTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCATGAAGGAAATGCGATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTATAAACCTACTTGCTATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCGGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACTCTCTATAATCTTTCTACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAACTGGGTAGAGAGGAAATGGTGTCATCTCCAGCAATCATAAGCACATTGGCGTCGATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAAGAGCAACGACAAGAAGAGCATTCCCTGACCAAGCCACAACGCCGACCAGAAACCAGCAATTCATCTATGCCTAA 2100 0.421 MMDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQQVEKIVDELASTVFAIDPSEKQVGDDLIALLQQGKKLDNSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGPMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPSESLDFNYWRLALSDTNSTNSKSVNSVNSCKLKGVKVVPVEESSMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALHEGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEMVSSPAIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQERATTRRAFPDQATTPTRNQQFIYA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00704 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Adu10g00704 699 CDD RING-Ubox_PUB 282 324 IPR045210 -
Adu10g00704 699 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Adu10g00704 699 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Adu10g00704 699 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 676 - -
Adu10g00704 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 510 IPR000225 GO:0005515
Adu10g00704 699 SUPERFAMILY RING/U-box 276 353 - -
Adu10g00704 699 Gene3D - 420 680 IPR011989 -
Adu10g00704 699 SUPERFAMILY ARM repeat 433 674 IPR016024 -
Adu10g00704 699 PANTHER U BOX DOMAIN-CONTAINING 2 676 - -
Adu10g00704 699 SMART arm_5 537 579 IPR000225 GO:0005515
Adu10g00704 699 SMART arm_5 453 497 IPR000225 GO:0005515
Adu10g00704 699 Coils Coil 177 197 - -
Adu10g00704 699 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00704 Adu-Chr10 8406412 8410394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00704 2 675 U-box Gene Family AT1G24330 67.353 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00704 - - adu:107478647 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00704 10 8406412 8410394 Adu10g00704 10 8406412 8410394 ECH
Adu10g00704 10 8406412 8410394 Adu03g04523 03 134582049 134586581 PCT