Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00580 ATGAGCCATATGCATGCTGTGCTTGGATACATTCGGGATGTGAGGGATAGTATTGGGAGCTTATCTAGGCGCAGTTTTGATGTTAGGCTGACCGGCCATCATAGAGGAAAATCTCATGGATCGGTACAGGATTTGCATGACCAGCCTCTAGTAATTCAAAATAGTCGCTGGGCAAGCTTACCCCCAGAACTACTGTATGATGTCATTAGACGGCTGGAGGAGAGTGAGAACACATGGCCTGCTCGAAAGCACGTTGTAGCATGTTCTGCAGTTTGCCAGTCTTGGAGGAGGATGTGCAAGGAAATTGTTAAGAGCCCTGAGTTCTGTGGCAAACTTACATTTCCTGTGTCCCTGAAGCAGCCTGGGCCACGAGATGGAATTATTCAGTGTTTCATCAAAAGAGATAAATCTAATTCAACATATCACCTATTCCTCTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGATGCGGAGAACTACATACACAGAGTATGTTATTTCTATGGATGCTGACAACATCTCGAGATCAAGTAACACATACATTGGAAAGCTGCGATCAAACTTCATTGGAACGAAATTCATTATATTCGATACACAGCCTCCATATTCCTCTGCCCATATATGCCCTCCTGAAGGAACTGGGAGAACGAGCCGCAGATTTTATTCCAAAAAGGTCTCTCCAAAGGTTCCATCTGGAAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTCCTTGGGACACGGGGCCCAAGGAAGATGCACTGCATCATGCATTCAATACCGGCCGCAGCACTTGACGCCGGCGGCAGTGTTCCTGGCCAACCAGAGCTGCTCCCCCGTTCCCTGGAGGACTCATTTCGGAGCATCTCATTTTCCAAGTCTCTAGATCACTCTATTGAGTTCAGCAGCTCACGATTTTCTGATATCGGTGGATCTGTTACCAATGAGGATGATGATGGCAAGATAAGACCCTTGGTTCTTAAAAACAAGCCTCCAAGATGGCATGAACAATTACAATGTTGGTGCCTCAATTTCCGAGGAAGGGTGACAGTTGCATCTGTTAAGAACTTTCAGTTGATTGCCGCCACCCAGCCTGCTGCCGGTGCGCCCACGCCATCTCAACCGACTCCACCGGATCACGACAAGATTATCCTGCAGTTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTACCGGTATCCCCTATCAGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCCTGTGAATAG 1302 0.4639 MSHMHAVLGYIRDVRDSIGSLSRRSFDVRLTGHHRGKSHGSVQDLHDQPLVIQNSRWASLPPELLYDVIRRLEESENTWPARKHVVACSAVCQSWRRMCKEIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNSTYHLFLCLSPALLVENGKFLLSAKRMRRTTYTEYVISMDADNISRSSNTYIGKLRSNFIGTKFIIFDTQPPYSSAHICPPEGTGRTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPAAALDAGGSVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSDIGGSVTNEDDDGKIRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00580 433 Gene3D - 52 104 - -
Adu10g00580 433 PANTHER TUBBY-RELATED 9 433 - -
Adu10g00580 433 ProSitePatterns Tub family signature 2. 418 433 IPR018066 -
Adu10g00580 433 Pfam F-box domain 57 104 IPR001810 GO:0005515
Adu10g00580 433 PRINTS Tubby superfamily signature 411 433 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 390 409 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 242 269 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 337 354 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 355 371 IPR000007 -
Adu10g00580 433 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Adu10g00580 433 Pfam Tub family 118 428 IPR000007 -
Adu10g00580 433 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 9 433 - -
Adu10g00580 433 SUPERFAMILY Tubby C-terminal domain-like 106 433 IPR025659 -
Adu10g00580 433 Gene3D Tubby Protein; Chain A 116 427 IPR025659 -
Adu10g00580 433 SUPERFAMILY F-box domain 53 101 IPR036047 GO:0005515
Adu10g00580 433 ProSitePatterns Tub family signature 1. 355 368 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00580 Adu-Chr10 6577422 6580369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00580 11 433 TUB Transcription Factor Family AT1G76900 69.214 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Adu10g00580 Tub 1e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00580 K19600 - gmx:100814578 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00580 10 6577422 6580369 Adu10g00580 10 6577422 6580369 ECH