Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00507 ATGGTGTTTCACCATCGCAGAAAACTCATGCCAGAAATCTGCGAGTCCATCTGCAAAGTGGAGAAGAATTGTTCTTCAAACTGTGAGGAATGCCTCAAACTCTGCATCACCAACCCCCAATACTACTATTATTCCCAACCACCGCCACCGATTCCTCCTCTCCCCTTAGACGATACATCAGATCATGGAAAAAGCCACGCGCTCTCGCCCTACTTGGTCCTTGCTCTCTCCGTTATCGGAGCTGCTTTCTTCGTTGTTATTTGCTGTGCAATCTTCGCGAGGATCTTCAGAAGGAGGAGAAGATCCTTATCGCCACCGTTGAGTCTTCGAACACAGGATAATACGCGTGATGATTTCTTCGTTGATGAGGAGCACGGTCCTGTGGTGGACCACCCGATCTGGTACATCCGTACACCCGGTCTTCAAGAATCGATTATCAACGCAATCGCTGTTTGTAGGTATAAGAGAGGTGAGGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTCAAGAAGATGAGAGTGTTAGATTATTGCCAAAGTGTAACCACGCTTTTCATTTGCCTTGTATTGATACATGGCTTAGGTCACACACCAATTGTCCTATGTGTAGAGCTCCAATTGTTTCCAACAACACTCTTAGGGTTCCATCTATGCAGCATCATAATCATAATCTTAATGTTCTTGATTCAACTTCAAGTTCAGGTTCAAGTTCAGGTTCAGGTTCAGGTTCAGGTTCCTTGGAGATGAGATCTGTGGAAAATATTAACAATGGAAGAAGCCTTAGAGGAATGGAAAATACTCAAAATATTGGCTTTGAATTGAGGAACACGGAAGAGGATGAAGAAGGAGAAGAACAAGGCCAATTGGGAGGTGAAAGAGTACTAAGCATGATTAGGCCAAGGAGATCTGTTTCTCTGGATTCTTCTTCTGTTGCAGATATTGCTCTTGCTGCATCTGCATTTGTTCTATCTGCGGATTTGGATTCCGATTCGAATAGAGTTCTTGGGGATGAGACTGAGAGTGAACGAATTGGTTCAAAGAGGGTTAATGTTAATGTTAATGTTAATGGAAATGAGAATGAGAATGGGGCAAGTAGTTCAAAAGGGAGAGGAGGAGGGAGAGGGAGAAGCTCTTCTTTCAGGATAAGGTATCTGCATAGTGTTGTTCCTAGTTCAATGAAGAGGTCACGTTCCTTCAATGGTAAATACCTTGTGTCTTCTTTGTATAGCCGCAGCCAAACTCAGAGGAAGCAAAATGCTAATAATCTGAGAAGCTTTTAA 1293 0.4331 MVFHHRRKLMPEICESICKVEKNCSSNCEECLKLCITNPQYYYYSQPPPPIPPLPLDDTSDHGKSHALSPYLVLALSVIGAAFFVVICCAIFARIFRRRRRSLSPPLSLRTQDNTRDDFFVDEEHGPVVDHPIWYIRTPGLQESIINAIAVCRYKRGEGLIEGTECSVCLSEFQEDESVRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVSNNTLRVPSMQHHNHNLNVLDSTSSSGSSSGSGSGSGSLEMRSVENINNGRSLRGMENTQNIGFELRNTEEDEEGEEQGQLGGERVLSMIRPRRSVSLDSSSVADIALAASAFVLSADLDSDSNRVLGDETESERIGSKRVNVNVNVNGNENENGASSSKGRGGGRGRSSSFRIRYLHSVVPSSMKRSRSFNGKYLVSSLYSRSQTQRKQNANNLRSF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00507 430 SMART FANCL_C_2 162 215 - -
Adu10g00507 430 SMART ring_2 166 207 IPR001841 -
Adu10g00507 430 Coils Coil 421 430 - -
Adu10g00507 430 MobiDBLite consensus disorder prediction 228 253 - -
Adu10g00507 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 216 IPR013083 -
Adu10g00507 430 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 417 IPR044675 -
Adu10g00507 430 MobiDBLite consensus disorder prediction 357 377 - -
Adu10g00507 430 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 417 - -
Adu10g00507 430 SUPERFAMILY RING/U-box 160 214 - -
Adu10g00507 430 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Adu10g00507 430 Pfam Ring finger domain 165 208 IPR001841 -
Adu10g00507 430 MobiDBLite consensus disorder prediction 357 381 - -
Adu10g00507 430 CDD RING-H2_PA-TM-RING 165 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00507 Adu-Chr10 5820479 5822043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00507 1 212 C3H Transcription Factor Family AT1G72220 40.598 1.73e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00507 - - adu:107468728 711.449