Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00495 ATGTTTGGAGATTTATCTGCTAAGGCAGCTCACATGATATCACTTACTAAGGTACTTGCTAATCTGTTTGCAGCTATGAACCCCAAAGTTATGGAACAAGAACTTGCATTTGCTGATTCTTTGTTCTTTATCATGAGAATATTGTCTGGAGTGCAGAACAACCTTCTGTTTGCTTCTTCCACCTATGTTAGCTCAGAGGAATCAGTGGAAACAATGGCAAAGGAAGAGAAAAAGGATATTTGGTGTATCTCAAGAAATATGACGAAACATAAGATAGAAATAAAGAAGATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGAAGAAGTCTGTTCAAGAAGGCCGGGGAGCTTTCAACTCTGTGTGATGCAGAGGTGGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCTAGTTCAAGTGTGGAACAGGTAGTAGAAATGCACAAAAATATGCATTCAAGCATCGACAAATCATCATATCACCCTCCAATGGAATTGCAAATGCGCAATGAAGTGGCAGATAAGACTCATGAATTAAGGTACTATATATCCTCATTTTTAATTAACTATTCACTTTTAAACATAGTTTCAGAGTAA 618 0.3851 MFGDLSAKAAHMISLTKVLANLFAAMNPKVMEQELAFADSLFFIMRILSGVQNNLLFASSTYVSSEESVETMAKEEKKDIWCISRNMTKHKIEIKKIENIAARQVAFSKRRRSLFKKAGELSTLCDAEVALLVFSATGKLFQHSSSSVEQVVEMHKNMHSSIDKSSYHPPMELQMRNEVADKTHELRYYISSFLINYSLLNIVSE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00495 205 SMART madsneu2 87 146 IPR002100 GO:0003677|GO:0046983
Adu10g00495 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 87 187 - -
Adu10g00495 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 96 142 IPR002100 GO:0003677|GO:0046983
Adu10g00495 205 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 87 187 - -
Adu10g00495 205 PRINTS MADS domain signature 124 145 IPR002100 GO:0003677|GO:0046983
Adu10g00495 205 PRINTS MADS domain signature 109 124 IPR002100 GO:0003677|GO:0046983
Adu10g00495 205 PRINTS MADS domain signature 89 109 IPR002100 GO:0003677|GO:0046983
Adu10g00495 205 Gene3D - 99 167 IPR036879 GO:0003677|GO:0046983
Adu10g00495 205 CDD MADS_MEF2_like 91 161 IPR033896 GO:0000977|GO:0045944
Adu10g00495 205 SUPERFAMILY SRF-like 89 162 IPR036879 GO:0003677|GO:0046983
Adu10g00495 205 ProSiteProfiles MADS-box domain profile. 87 147 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00495 Adu-Chr10 5710142 5723055 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00495 87 187 MADS-box Gene Family AT2G22540 53.636 2.39e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu10g00495 SRF-TF 8.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00495 - - ahf:112784740 186.422