Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu10g00493 | ATGTCAAAACAGAAGATGGAGATAAAGAAGATAGAGAAGAATGCATCAAGGCAAGCCACCTTTAGTAAGAGGAAGAGAGGGATTTTCAAGAAGGCTAAGGAGCTTTCAACTCTTTGTGATGCTGACTTGGCTCTCATTGTCTTTTCTCCTTCTGGCAAGCTCTTCGATTTCGCTTCCTCAAGTGTGCAGGAAGTAACTGAAAGATATCATATGCAAACAAGCATTTACAGATCACAAGACCAACAGTCTCATGAGTTTCAACTTGAGAAGGACACCTACTACCTGAAGTGCAAGGAACTCACAGATAAGACTATTGGACTCAGGCACTTGAATGGAGAGGAGCTGCAAGGATTGAAAATTCATGAACTACAAAAACTAGAGAGAGTGTTAGAAAAGGGTTTGGCTCGTGTTTCAAAAGAAAAGGATCAAAGAAATCTTAAAGATATTATTGAGATGAAGAAAAGGGGACTTCAAATGGTGCAAGACAACCATCGACTGAAAAAGATGAGAAGTCAAGCAAACAGCCAAGGGCAATCATCAAAGTCAAACTCTGTTGAAGAGTCAGATAACCGTGATCATGATGCTCCTAATCTCAACTTGGGGCTTCCAATGTTCGAATGA | 621 | 0.4042 | MSKQKMEIKKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFASSSVQEVTERYHMQTSIYRSQDQQSHEFQLEKDTYYLKCKELTDKTIGLRHLNGEELQGLKIHELQKLERVLEKGLARVSKEKDQRNLKDIIEMKKRGLQMVQDNHRLKKMRSQANSQGQSSKSNSVEESDNRDHDAPNLNLGLPMFE | 206 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu10g00493 | 206 | CDD | MADS_MEF2_like | 3 | 70 | IPR033896 | GO:0000977|GO:0045944 | |
Adu10g00493 | 206 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | Coils | Coil | 123 | 143 | - | - | |
Adu10g00493 | 206 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | SUPERFAMILY | SRF-like | 3 | 87 | IPR036879 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | Pfam | K-box region | 88 | 169 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Adu10g00493 | 206 | MobiDBLite | consensus disorder prediction | 167 | 206 | - | - | |
Adu10g00493 | 206 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Adu10g00493 | 206 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | MobiDBLite | consensus disorder prediction | 170 | 184 | - | - | |
Adu10g00493 | 206 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 188 | - | - | |
Adu10g00493 | 206 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Adu10g00493 | 206 | PANTHER | MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 | 1 | 188 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu10g00493 | Adu-Chr10 | 5681515 | 5688183 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu10g00493 | 1 | 172 | MADS-box Gene Family | AT2G22540 | 49.133 | 1.07e-53 | 170 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Adu10g00493 | K-box | 2.3e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu10g00493 | - | - | ahf:112786765 | 381.333 |