Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00470 ATGGGGCGAGGAAAGATCGCGATTCGAAGGATCGACAATTCAACGAGCCGGCAAGTAACGTTTTCGAAAAGAAGAAATGGATTGCTGAAGAAAGCTAAGGAATTGTCCATTCTGTGTGATGCTGAAGTTGGATTGATTGTGTTCTCCAGCACTAGCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCGGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGCAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGCGTTCAAGAACTACAAAATCTTGAAAATCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGTTTATGAAGCAAGGAGTACAAATGGAGAAAATGCAGCATCCAATCCTCCATACACTATCGGAAATGGATATGACTTACTTGCACCTATCAGTCTCCAACTAAGCCAGCCAGAGACTCAATACACTGAACCACCTGCCAAAGCAATGAAACTGGGACTGCAGCTGCAATAA 639 0.4272 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTSKLYEYASTSMKSIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHSRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVYEARSTNGENAASNPPYTIGNGYDLLAPISLQLSQPETQYTEPPAKAMKLGLQLQ 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00470 212 ProSiteProfiles K-box domain profile. 86 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g00470 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 152 211 - -
Adu10g00470 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 Pfam K-box region 84 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu10g00470 212 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Adu10g00470 212 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Adu10g00470 212 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 156 - -
Adu10g00470 212 PANTHER MADS-BOX TRANSCRIPTION FACTOR 152 211 - -
Adu10g00470 212 Coils Coil 86 106 - -
Adu10g00470 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 156 - -
Adu10g00470 212 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Adu10g00470 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu10g00470 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00470 Adu-Chr10 5454725 5463992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00470 1 211 MADS-box Gene Family AT2G14210 58.577 3.91e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu10g00470 K-box 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00470 K09264 - gmx:100808145 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00470 10 5454725 5463992 Adu10g00470 10 5454725 5463992 ECH