Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00379 ATGGCGGCTCAGCTACCAGAACACTTCAAGTGTCCGATTTCACTCGAAATAATGTCCGACCCAGTCATACTCTCCTCCGGCCACACATTCGACCGCTCCTCCATACAGCGCTGGCTCGATGCAGGCCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCCGATCATGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCCAATCCCTCACCTCCCCACCCCCAACCtAACGCTCTCTCTTTGCTTCTCAATCTCAGTCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTGCCCGCCTCGTCGCCGTCATCTCCGGAACGGCTGCCGGAAATCCATCCCCGGACTGCCGCGCGCTCGCAGCCACAACACTCACAAGCCTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGGCACTCGTAAGGGATGGAAAGGGGAGAGAGAAGAAGGAAGCCGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACCGGCGGAGGGCGGTGGAGTGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGCTTGGAGAGGGCCGTTGAGGTTGTTGGAGTTCTTGCAAAGTGTAAGGAAGGGAGGGAACAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGTCGGGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCTATGGAAGCCATCAGAGAAGGCCTTTTGGAAACATGTCTTGGCTTTCTGGAAGATGATAACGAGAAAGTGAGAAGGAATGCTTCTGCTTTGCTTCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 948 0.5665 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNFTPLTPTPIPNPSPPHPQPNALSLLLNLSLDDHNKVGLVAEGVVARLVAVISGTAAGNPSPDCRALAATTLTSLAVVEVNKATIGAYPHAIESLVALVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVVGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMEAIREGLLETCLGFLEDDNEKVRRNASALLQNLRGNNRIS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00379 315 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Adu10g00379 315 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 78 - -
Adu10g00379 315 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 91 312 - -
Adu10g00379 315 SMART arm_5 269 310 IPR000225 GO:0005515
Adu10g00379 315 SMART arm_5 227 268 IPR000225 GO:0005515
Adu10g00379 315 SMART arm_5 151 189 IPR000225 GO:0005515
Adu10g00379 315 SMART arm_5 102 147 IPR000225 GO:0005515
Adu10g00379 315 Coils Coil 287 307 - -
Adu10g00379 315 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Adu10g00379 315 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Adu10g00379 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Adu10g00379 315 SUPERFAMILY RING/U-box 3 73 - -
Adu10g00379 315 PANTHER U BOX DOMAIN-CONTAINING 2 78 - -
Adu10g00379 315 Gene3D - 82 216 IPR011989 -
Adu10g00379 315 PANTHER U BOX DOMAIN-CONTAINING 91 312 - -
Adu10g00379 315 Gene3D - 217 314 IPR011989 -
Adu10g00379 315 CDD RING-Ubox_PUB 9 50 IPR045210 -
Adu10g00379 315 SUPERFAMILY ARM repeat 88 309 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00379 Adu-Chr10 4496567 4497664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00379 1 310 U-box Gene Family AT4G21350 48.663 2.33e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00379 - - adu:107468721 568.155