Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00347 ATGCGAATGAGGGAGGGGTTGCGGGTTGCCACTGCTGTCGCTGCATCGTTTTTCGCCGGTGAAGCCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGCCGGCAATGTTGGTGGCAGTGGAGGTGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGAATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGACTTTGTAACTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAACAGGTGAAGCACAAGGAAGTGATGATAATGATTGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAACAGCAATATCCACTGAGGTCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACTAG 630 0.4365 MRMREGLRVATAVAASFFAGEALFFFFFFFFFFFFFFSPAMLVAVEVDETRDELGAEFHKKLNLKDEDERVAENEKKDSDFVTGSGEYGGEELGGEGGCAPKTGEAQGSDDNDCWDDDEGYGWNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRSDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00347 209 MobiDBLite consensus disorder prediction 121 141 - -
Adu10g00347 209 ProSiteProfiles Zinc finger C3H1-type profile. 177 205 IPR000571 GO:0046872
Adu10g00347 209 MobiDBLite consensus disorder prediction 69 174 - -
Adu10g00347 209 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 203 IPR000571 GO:0046872
Adu10g00347 209 PANTHER PROTEIN PHOSPHATASE RELATED 51 207 - -
Adu10g00347 209 Gene3D - 150 206 - -
Adu10g00347 209 SUPERFAMILY CCCH zinc finger 177 205 IPR036855 GO:0046872
Adu10g00347 209 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 51 207 - -
Adu10g00347 209 SMART c3hfinal6 177 204 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00347 Adu-Chr10 3992684 3995517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00347 174 209 C2H2 Transcription Factor Family AT5G16540 52.778 3.96e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu10g00347 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00347 - - adu:110280340 252.677