LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu10g00326	ATGAAGTTCAACCCAAGAGTATCGAGCAGTCGCCGCAAGAGCCGCAAGGCGCACTTCACGGCCCCGTCCAGCGTGCGGCGCGTGATCATGAGCGCACCCGTCTCCACCGACCTCCGCGCCAAGTACAACGTGCGCTCCATGCCGGTCCGCAAGGAAGACGAGGTTCAGGTTGTTCGTGGCACCTACAAGGGCCGTGAGGGCAAGGTCACACAGGTCTACCGCCGCAAATGGGTGATCCACATTGAGCGCATCACTCGAGAGAAGGTTAACGGCTCCACCGTCAACGTCGGAATCCACCCTTCCAAGGTTGTTATCACCAAGCTTCGCCTCGACAAGGACCGCAAGTCTCTCCTTGACCTTTTTGGGAACGACATGGTTGCTGTTGTATTTGCAATGTGGGATTGCCATAATCGTAGGGGGGTATTTGATGATTTGCATTCAAAGGTTATGCAATATAAACTTGACGAGATATCATCCTTCGGCCAGGAGGTTATTCATGGTTCATGGTTATGA	513	0.538	MKFNPRVSSSRRKSRKAHFTAPSSVRRVIMSAPVSTDLRAKYNVRSMPVRKEDEVQVVRGTYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVITKLRLDKDRKSLLDLFGNDMVAVVFAMWDCHNRRGVFDDLHSKVMQYKLDEISSFGQEVIHGSWL	170

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu10g00326	170	SUPERFAMILY	Translation proteins SH3-like domain	8	122	IPR008991	-
	Adu10g00326	170	SMART	kow_9	48	75	IPR005824	-
	Adu10g00326	170	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	8	119	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Adu10g00326	170	PANTHER	60S RIBOSOMAL PROTEIN L26-1	1	120	-	-
	Adu10g00326	170	Pfam	KOW motif	53	82	IPR005824	-
	Adu10g00326	170	MobiDBLite	consensus disorder prediction	1	20	-	-
	Adu10g00326	170	CDD	KOW_RPL26	53	105	IPR041988	GO:0003723
	Adu10g00326	170	Gene3D	-	1	124	IPR014722	-
	Adu10g00326	170	ProSitePatterns	Ribosomal protein L24 signature.	52	69	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Adu10g00326	170	TIGRFAM	rplX_A_E: ribosomal protein uL24	8	119	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Adu10g00326	170	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	120	IPR005756	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu10g00326	Adu-Chr10	3838726	3840128	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu10g00326	1	119	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	87.395	1.70e-73	216

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu10g00326	K02898		-	gmx:100819391	208.764