Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00290 ATGAAATTGCCCCAAGGACCACATCATGAAATGGAAGAACAGTCAATATTGTTTGAATTACTGTGTATGCTACAATTGATGGAGGCAGCAGCTGTTGGAACTGGCATGGAGGCTGAGACGCGTAAAAGAGAAGGAGAGTCGTCGGGTTGGGTTGTTGGGTTAGGCTCCAATTTTCACGGCTTGCATCCAATGTCTGACATCGAAAATCATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGCGAATTTCTCGTGGATCTGCTTATGAAAGTTCACGGATGACAAGGCAAGATGATGAAAGGAAAACCTTTCATGACCGCCATCGCAGAGACCACAAGGTTGGAAGGTTTATGGGGAGGGGTAAATATGACAGTTATAATGGGCACAAGAAAAGTGATTATGATAGGCATAATGACCGTGTTTGCGATGGAGAAACAAAGCACAAATATGGAGCGCATTCAAAGAGATCGAGGAGGAAATCAAGATCAAGATCACGGTCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGATGGGAACACTTTCTGTAATGCACATTCAACCTATGACACAGCAGGCTACAAGGCATGCCCGGCGAGTTTATGTAGGTGGGATTCCTCCGTTGACTAATGAACAGACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGCAAGGACTATCATGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAAATACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTCTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAATTGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGCCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATGCAGAGAGAGACAGGCGCGAGGGAGAAGGAAGCTCGCGACAGAGATGAGATGGACCTTCGTCATCACCATTGGTGTGGTCGGAGTCGTGGTCGTTGTTGTCGTCGATTGAAGGTACCGCCGTCGTAG 1503 0.4571 MKLPQGPHHEMEEQSILFELLCMLQLMEAAAVGTGMEAETRKREGESSGWVVGLGSNFHGLHPMSDIENHASLRGRSSPDKRISRGSAYESSRMTRQDDERKTFHDRHRRDHKVGRFMGRGKYDSYNGHKKSDYDRHNDRVCDGETKHKYGAHSKRSRRKSRSRSRSRSPSRSECKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQMGTLSVMHIQPMTQQATRHARRVYVGGIPPLTNEQTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQARTIMVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQILESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKLGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQRETGAREKEARDRDEMDLRHHHWCGRSRGRCCRRLKVPPS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00290 500 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 91 461 IPR006529 GO:0003723|GO:0005634|GO:0006397
Adu10g00290 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 431 IPR000504 GO:0003723
Adu10g00290 500 SUPERFAMILY RNA-binding domain, RBD 360 441 IPR035979 GO:0003676
Adu10g00290 500 SUPERFAMILY RNA-binding domain, RBD 154 320 IPR035979 GO:0003676
Adu10g00290 500 CDD RRM2_U2AF65 360 436 - -
Adu10g00290 500 Gene3D - 355 456 IPR012677 -
Adu10g00290 500 MobiDBLite consensus disorder prediction 70 189 - -
Adu10g00290 500 SMART rrm1_1 361 434 IPR000504 GO:0003723
Adu10g00290 500 SMART rrm1_1 241 319 IPR000504 GO:0003723
Adu10g00290 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 323 IPR000504 GO:0003723
Adu10g00290 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 438 IPR000504 GO:0003723
Adu10g00290 500 CDD RRM1_U2AF65 239 321 - -
Adu10g00290 500 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 64 461 - -
Adu10g00290 500 MobiDBLite consensus disorder prediction 117 150 - -
Adu10g00290 500 Gene3D - 235 336 IPR012677 -
Adu10g00290 500 MobiDBLite consensus disorder prediction 73 106 - -
Adu10g00290 500 MobiDBLite consensus disorder prediction 151 166 - -
Adu10g00290 500 PANTHER RNA-BINDING PROTEIN 64 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00290 Adu-Chr10 3459157 3467465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00290 362 458 Eukaryotic Initiation Factors Gene Family AT1G49760 28.866 7.20e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00290 K12837 - vvi:100243034 478.404