Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00274 ATGGCAATAGATCACTACTTCTCTCAGGAATGGAAAACCATCCCAAATTCGGCAGCCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCCCGAGAACCGGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCATTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAATCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTACCATGAATCCAGGACCCCAATACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAACTAACAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA 702 0.4658 MAIDHYFSQEWKTIPNSAAETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGATMNPGPQYPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTTNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00274 233 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Adu10g00274 233 MobiDBLite consensus disorder prediction 106 128 - -
Adu10g00274 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 233 - -
Adu10g00274 233 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Adu10g00274 233 CDD RING-HC_AtRMA_like 28 78 - -
Adu10g00274 233 MobiDBLite consensus disorder prediction 114 128 - -
Adu10g00274 233 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Adu10g00274 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 127 IPR013083 -
Adu10g00274 233 SUPERFAMILY RING/U-box 26 89 - -
Adu10g00274 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Adu10g00274 233 SMART ring_2 30 76 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00274 Adu-Chr10 3327798 3329799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00274 13 219 C3H Transcription Factor Family AT4G27470 42.202 2.02e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00274 K10666 - gmx:100816864 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00274 10 3327798 3329799 Adu10g00274 10 3327798 3329799 ECH
Adu03g03406 03 121167840 121169455 Adu10g00274 10 3327798 3329799 PCT