Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00259 ATGGATTTTAATTGGGACGCTGAGCATATATTTCAACTGTATTTGCATGATTATATGGTGAAAAGAGGAATGCACAAAACCGCTGAGATTTTCAGGAAGGAATGCAATCTGACTGACACTGCTGTTACACTTGATTCTCATGATGGGTTCTTGCTCGAATGGTGGTCTGTTTTCTATGAGATATATATGTCTAGGGCTAGACTAGCGAAGGATCAGGCGACTGGGGCAGAATCTTCTAGGAAGGTCCCAGGAAATACATGTAATGCCGGAATTAGTGTCCCTCCAATCCCTCGATCATCCATGAGTGAGCAGAGACCTGACCAATGTCATGTCAACGCCAGATATAACAGGATGATGGCACAACCAGCTGCATGTGTACTACCATCTACACTGAATGCAAAAGAGCATCCTGGATATCTGACTGTAGATGCCGCCAGAGCAAACAATTTGAAGCTGGCTGTGACCAATTCAAGTAATTCGCTGCAAGATGTAGGGAATAATGCTCACAGGGAAGCTTTTAAGGATATTTGCATCGGAAGGGACGTATCTAGGGACCCTCTAGATGTAGCCCAAAGGACATTGCAACATAAACCAAATACTGGTGAATCTTTCAATCGAATGCCAATTAACGGCTGGCCAGTAAATAACCAAGTATTAACCTCATTTTTGCGAGCACCAAACTTTCAACAGCAATTTCAAGCGCAGACAATGCAAAATCCGGAAGCAATTCCTGCTCATGTACGTGCAGGTAGTCCTAAAAGTCAGAGTTTCCCAGTTCCTGGAAACTCTGTTGAGTGCAACAATCATCACACAAAGGTTTCCGAGGCTGAATTAAGCATAAAAGATAGGCAGACAATGGACCCAATGATTAGGGATAAGCAACCACAGATGCAGTCTCAGAATGTTGAGGTTGTACCCGTTCCTCATCAGAAGAGCAAAAAGAGAAAGGCAGCGATACCCTTGAGGACTGGAGAAAGTGCCATGGATTGTGTAGATGCAGAAGATGGAAAGCCTATGGATGAAAGTGTGGAGTCTTTCCTGTCATTCGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGACTCGTATTTCAGCTGCACGTGGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAAGTTTTATCCACCCATTTTTCATGCGATGGAAAGGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGACATTCACATCTCATTACAGATGTTCGGTTTAGGCCAAGTTCTACTATATTTGCAACATCTTCCTTTGACCGATCTATAAAACTTTGGGATGCAGCCAGACCCGGCAAGTCATTGTTCCAACTCGACGGTCATGCCGACCAAGTAATGTCATTGGACTTCCATCCAAGGAAGCCTGCCATTCTTTGTTCATGTGATAGCAATGACATAATTCGTCTGTGGGATATCAATCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAGTAAACAAGTCAGGTTCCAGCCTCGTATTGGGAAGTTTCTGGCTGCTGTGTCCGGAAATAATATCAAGATAGTTGATTTTGAGAGCAATAGATTTATGTACCACCTAAAGGATCATGTCAAAGATGTTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCGTCAGTGAAGATTGCGCACGTGTCTGGTCTGTTGCAGATGGAAAATGTATAAGTGAATTGAATTCCACTGGGAACAAGTTCCAATCGTGTGTATTTCATCCAGGATATCATAATCTCTTAGTAATTGGTGGCTATGAGTCCCTGGAATTGTGGTGTACAACAGAGAGCAGTAAAACATTGACAGTTCCTGCACACAAGGGACTAATTGCTGGACTAGCACATTCACCACAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGCGTGAAACTCTGGAAATAA 2013 0.4267 MDFNWDAEHIFQLYLHDYMVKRGMHKTAEIFRKECNLTDTAVTLDSHDGFLLEWWSVFYEIYMSRARLAKDQATGAESSRKVPGNTCNAGISVPPIPRSSMSEQRPDQCHVNARYNRMMAQPAACVLPSTLNAKEHPGYLTVDAARANNLKLAVTNSSNSLQDVGNNAHREAFKDICIGRDVSRDPLDVAQRTLQHKPNTGESFNRMPINGWPVNNQVLTSFLRAPNFQQQFQAQTMQNPEAIPAHVRAGSPKSQSFPVPGNSVECNNHHTKVSEAELSIKDRQTMDPMIRDKQPQMQSQNVEVVPVPHQKSKKRKAAIPLRTGESAMDCVDAEDGKPMDESVESFLSFENEHADHRVVPFSNLTRISAARGKNENKGFSFEEVSCLHSSKNKVLSTHFSCDGKVLASAGHEKKVFIWNMETLNCVTTTEGHSHLITDVRFRPSSTIFATSSFDRSIKLWDAARPGKSLFQLDGHADQVMSLDFHPRKPAILCSCDSNDIIRLWDINQRTCLHTTKGGASKQVRFQPRIGKFLAAVSGNNIKIVDFESNRFMYHLKDHVKDVLSICWDMSGNYVASVSEDCARVWSVADGKCISELNSTGNKFQSCVFHPGYHNLLVIGGYESLELWCTTESSKTLTVPAHKGLIAGLAHSPQDEMIASASHDHCVKLWK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00259 670 SMART Lish 7 39 IPR006594 GO:0005515
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 461 - -
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 638 670 - -
Adu10g00259 670 Pfam LisH 16 34 IPR006594 GO:0005515
Adu10g00259 670 ProSitePatterns Trp-Asp (WD) repeats signature. 492 506 IPR019775 -
Adu10g00259 670 SUPERFAMILY WD40 repeat-like 381 670 IPR036322 GO:0005515
Adu10g00259 670 Gene3D - 524 670 IPR015943 GO:0005515
Adu10g00259 670 MobiDBLite consensus disorder prediction 75 106 - -
Adu10g00259 670 CDD WD40 389 670 - -
Adu10g00259 670 Gene3D - 289 523 IPR015943 GO:0005515
Adu10g00259 670 SMART WD40_4 589 628 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 422 461 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 380 419 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 629 670 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 465 505 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 508 545 IPR001680 GO:0005515
Adu10g00259 670 SMART WD40_4 548 586 IPR001680 GO:0005515
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 428 IPR001680 GO:0005515
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 472 507 - -
Adu10g00259 670 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 670 IPR044716 GO:0003714
Adu10g00259 670 MobiDBLite consensus disorder prediction 78 106 - -
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 472 514 IPR001680 GO:0005515
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 670 IPR001680 GO:0005515
Adu10g00259 670 Pfam WD domain, G-beta repeat 636 670 IPR001680 GO:0005515
Adu10g00259 670 Pfam WD domain, G-beta repeat 552 585 IPR001680 GO:0005515
Adu10g00259 670 Pfam WD domain, G-beta repeat 424 461 IPR001680 GO:0005515
Adu10g00259 670 Pfam WD domain, G-beta repeat 467 505 IPR001680 GO:0005515
Adu10g00259 670 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
Adu10g00259 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 461 IPR001680 GO:0005515
Adu10g00259 670 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00259 Adu-Chr10 3140078 3144938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00259 404 669 Miscellaneous Gene Families AT5G08390 24.000 9.86e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Adu10g00259 WD40 0.0052 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00259 - - gsj:114387334 781.941