Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00196 ATGATGTCTTGTTTGTCCTCGTCTGCATCGGCGGCGGCCACCAGAGGTAACCCTAAACCACCGCAAGAACAAGAGAAGCAACTAATCCCAGCGCTCCCGAACGAAGTCGCAGTGAGCTGCTTAGCACGCGTGCCACGCCGCCATTACAAAGCACTTTCCCAAGTTTCGGGACCCATACGCTCCCTCCTGGCTTCTCCTATATTCTATAATGCCCACTCTGCCTTTCATGGCAAGCAACCCTTCCTCTACCTCCATCTCCACCCAAACTGCGGCCTCCCTTCGCAATGGTGGGCGTTCTCCCTAGCCTCTCCTCCATCACCATGCACAAAACTAATGCCCTTTCCCATTCCACCGCTTCCTTCGCCAACATATCAAGCCGCCTATGCCATCCTAGGCCACCACATCTACGTTATCGGCGGCATACTTTCCCAGCAAGTGTGGATCCTCGACTGCCGCATTAACCGCTGGCGACAAGGCCCTAGCATGCTCATCCCTCGCGTCAGTGCATCTACCGCTGTCGCGGACGGCAAGATCTACGTCATGGGCGGACGGGGACGCCAGCTGCCAGATATTTGGGGCGAAGTTCTTGACCCAGCTGTTGGTCGTTGGGTGGAGGCGGATTATAACTGCCTCAACTCAAGCAGTGGAGATGGCACGGAATTCAAGAAGAATAGAGCGTGCTTTACGGTTGGTGCGCGTGTTGTGACGTGCGATGCGAGGAGAGGGGACAAGTTATGGTTGGGGAGAAACGGGTGGGGCTGTTTTGAGcagtggcggatccacgggggacctaagGATGGTTTCTTTTATACATTGGAGTACCCGGACAAGCTGGTGGGGCACGAATTGGGGGACATGGAGGAGTCGGTTGAGTATTGGGGGAAGCCTTGGGCGGTGAAAGGGTTGTTGGATTTGCCCATGTGGTACTCAATAGGCACTAGGAGGAGGCCCAAGCAACTGGCTGGTTCCGGAAGCAATGGGAGGAGCTTGTTTCTGGTTTGGATTCATTATTGGAACCAACAATATGAGCTCTGGTGCTCTCAACTGGACCTCAACAACACAAAGAGGGGTGATGATTGGCAGCTTTCTGCCACTCCTTCTTCGTCCCACAAAATCTTCTCTTCTTTTGACCAATTCACCATTGGCGGCAAGGTTGCGTGGCAAATGAGATTGGCTGCTGCAGAGGAATTTTATCCCCAAAGACTTGGTGAGGCTGATTGTATCTACTATTTGAGGACTGGATTTTGTGGCTATGGTTCCCGCTGCCGTTTCAACCATCCCTGTGACCGGATCGAGATCCGGTTTCATTGTGTCCGCCCAATGGATCAATACGGCCGATTGAGCGAGGGTTTCCGGTCTGATCTGGCGAGTGTTGAGATTATTGAATCAAATGTCTTTTTGTTTGATGGGGGCTGGAGGATAGGAGTACCTGGAGCCAATTGGCCAGCCTTTGTGCCAGATCTTGGGATGTCTGAGAAGAAAGACGAAAGAGAAGCTTCTGTAGAGGCTGCAAATCCCATTGAACTTTACTGTGAGCCTTTGAGGTCTCTCTATTCTGTTGGAAGAGCGGCGGGTTCCGACCTGGCTCTGGTTTCTATTTGTTTTTCTTCTTTTTCGGCTACCCACTCCGAAACAACCCCCAGAATCAGAACCGGAAAGCCAAGTTCGGCCTGTCCCCAAAATTTTACTGCCGTTAACCGCCGCACGCGCCGACACGCGCCGCCCCTTTTCCTGCGCGTGGTCCTCACGCGCCTCCGCTCCAGACACGCGTGA 1773 0.5245 MMSCLSSSASAAATRGNPKPPQEQEKQLIPALPNEVAVSCLARVPRRHYKALSQVSGPIRSLLASPIFYNAHSAFHGKQPFLYLHLHPNCGLPSQWWAFSLASPPSPCTKLMPFPIPPLPSPTYQAAYAILGHHIYVIGGILSQQVWILDCRINRWRQGPSMLIPRVSASTAVADGKIYVMGGRGRQLPDIWGEVLDPAVGRWVEADYNCLNSSSGDGTEFKKNRACFTVGARVVTCDARRGDKLWLGRNGWGCFEQWRIHGGPKDGFFYTLEYPDKLVGHELGDMEESVEYWGKPWAVKGLLDLPMWYSIGTRRRPKQLAGSGSNGRSLFLVWIHYWNQQYELWCSQLDLNNTKRGDDWQLSATPSSSHKIFSSFDQFTIGGKVAWQMRLAAAEEFYPQRLGEADCIYYLRTGFCGYGSRCRFNHPCDRIEIRFHCVRPMDQYGRLSEGFRSDLASVEIIESNVFLFDGGWRIGVPGANWPAFVPDLGMSEKKDEREASVEAANPIELYCEPLRSLYSVGRAAGSDLALVSICFSSFSATHSETTPRIRTGKPSSACPQNFTAVNRRTRRHAPPLFLRVVLTRLRSRHA 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00196 590 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 427 IPR000571 GO:0046872
Adu10g00196 590 SUPERFAMILY F-box domain 24 101 IPR036047 GO:0005515
Adu10g00196 590 Pfam Kelch motif 125 166 - -
Adu10g00196 590 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 23 213 - -
Adu10g00196 590 MobiDBLite consensus disorder prediction 1 28 - -
Adu10g00196 590 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Adu10g00196 590 SUPERFAMILY Kelch motif 81 206 IPR015915 GO:0005515
Adu10g00196 590 SMART c3hfinal6 401 428 IPR000571 GO:0046872
Adu10g00196 590 SMART kelc_smart 134 176 IPR006652 GO:0005515
Adu10g00196 590 SUPERFAMILY CCCH zinc finger 403 430 IPR036855 GO:0046872
Adu10g00196 590 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 23 213 - -
Adu10g00196 590 MobiDBLite consensus disorder prediction 1 21 - -
Adu10g00196 590 Gene3D - 70 263 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00196 Adu-Chr10 2612087 2618073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00196 21 203 EF-hand Containing Proteins AT4G39560 37.895 4.86e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu10g00196 Kelch_6 8.9e-07 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00196 - - ahf:112714501 744.191