Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00160 ATGTCTAAAGAATATGCGGATGAGATTATTATTGAAGAAGATGAGGAAACTTCTTCACTGGGATGTTGTTCCCAGAAATGCTCTTCATTTGATTTGAATGAAGAAGCAAGCAGTGAAGAAGAAGAAGAAGAAGGAGGTAAGAATAAGAAGGAGGAGGATGAGGCAGCATGTGATGAAGAGGAGATCAATGCGAATGGAACATCAAACTCAAGAGAAGATGAAGGAAATAATAACAACAAAAACAATGAGAGAAGAGGTGGAGTTAGGCAATATGTTAGATCCAAGATGCCAAGGCTTCGATGGACTCCTGAGCTTCATCTCTCTTTTGTTCATGCTGTTGAAAGACTTGGCGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGTTGATGAATGTGAGAGGGCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGACGAGACCGGCCAAGTATTAGGTCAAACATACAGATCGAGGCAATTGCATGAAGTAGTGGGACGTAGTAGAAATCATCATGAGTTACTCAATCCTCATCACCATTTCAAGATGGGAAACGGTGGCATTATTCTTGCAACCAATTTCAACCATCATCATCATTTCCAAGGTTCTCTGATGCCCCATCACCACCACCCCCACTTCTCCCTTTCATCACGTTCACATGCAATCGCCACCGACTCAGGGCAACATGAATTGTATTTGAATCATCAAGGATTGAGAGTAACAAGCAACGAAATTGTGTCCTCATCAAGTAATCATCAAGGAAGATCGAGTTCAAACCAGGTTCAAGTGATGGATACGTCTTGCAGAATTGCACCAATTAGACCAAGTCATTTCCTTGAAGAGAAGAAGTGGCCTCCCTTGGAAATTATGAACAATCATCATCAATGGAAGTTCAAGGGTCCTACTACTATTGGCAACATTCCTGAATCTGTTCAGCCAAGTATCAGAGAGTATTTATCAACCTCCAAGAATAATTTAAGGCTAGAATTTGATCCTCCATTTCGGATAAAGTTGAATGAAGTGAAGAGGGAGAAAAGGGAGGAAAGGTTGCCCAATTTGCAACTAGGTTTGAGTCATGGCGGAGATGGAAGTGATGATGATTGCAGAGAAACACAAGAGATCAGCACTAAGCTTTCACTTTCATAG 1170 0.4171 MSKEYADEIIIEEDEETSSLGCCSQKCSSFDLNEEASSEEEEEEGGKNKKEEDEAACDEEEINANGTSNSREDEGNNNNKNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDETGQVLGQTYRSRQLHEVVGRSRNHHELLNPHHHFKMGNGGIILATNFNHHHHFQGSLMPHHHHPHFSLSSRSHAIATDSGQHELYLNHQGLRVTSNEIVSSSSNHQGRSSSNQVQVMDTSCRIAPIRPSHFLEEKKWPPLEIMNNHHQWKFKGPTTIGNIPESVQPSIREYLSTSKNNLRLEFDPPFRIKLNEVKREKREERLPNLQLGLSHGGDGSDDDCRETQEISTKLSLS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00160 389 Pfam Myb-like DNA-binding domain 99 149 IPR001005 -
Adu10g00160 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 314 IPR044848 GO:0003700
Adu10g00160 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 329 389 IPR044848 GO:0003700
Adu10g00160 389 MobiDBLite consensus disorder prediction 357 389 - -
Adu10g00160 389 MobiDBLite consensus disorder prediction 1 91 - -
Adu10g00160 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 152 IPR006447 GO:0003677
Adu10g00160 389 MobiDBLite consensus disorder prediction 18 32 - -
Adu10g00160 389 SUPERFAMILY Homeodomain-like 95 151 IPR009057 -
Adu10g00160 389 MobiDBLite consensus disorder prediction 76 90 - -
Adu10g00160 389 Gene3D - 96 153 - -
Adu10g00160 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 153 IPR017930 -
Adu10g00160 389 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 329 389 - -
Adu10g00160 389 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00160 Adu-Chr10 2260274 2263597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00160 88 158 G2-like Transcription Factor Family AT2G42660 77.465 1.10e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Adu10g00160 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00160 - - adu:107468251 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00160 10 2260274 2263597 Adu10g00160 10 2260274 2263597 ECH