Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00142 ATGGCCACTTCCGCCGCCGCCACAACTGCCGCAGCGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAACGCCGAAATGATGGTCAGTCTTCGATTATTGTTGCCATCGAGAACCCTCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGGGCAGTCTTGAAGTTTGCCCAATACACGGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCGTATAACGAGCCTCGCTTACTCATTCTGACTGATCCAAGGACTGATCATCACCCCATTAAGGAAGGTGCTCTTGGAAATATTCCAACGATTGCCTTCTGCGACACTGATTCTCCGATGCGCTATGTTGATGTTACCATTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGCTTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATAAGGGGTACTATTCGTCCAGGGCTTAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCCGCAGCTGATGGGGAATGGGGGGCTGTTACAGCTGAACAATCCTGGACTGAACCGGTTCCTCAGCAACCCATTGCAGCTGCTCCTGCGAACTGGGCCCCAGACGCCGTCAACCTGGAGGTGTTGCTCCCACTGGCTGGGACTAGGCATTGA 843 0.5136 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGQSSIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHHPIKEGALGNIPTIAFCDTDSPMRYVDVTIPANNKGKHSIGCLFWLLARMVLQIRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGAVTAEQSWTEPVPQQPIAAAPANWAPDAVNLEVLLPLAGTRH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00142 280 TIGRFAM uS2_euk_arch: ribosomal protein uS2 19 199 IPR005707 GO:0003735|GO:0006412|GO:0015935
Adu10g00142 280 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Adu10g00142 280 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Adu10g00142 280 PRINTS Ribosomal protein S2 signature 150 164 IPR001865 GO:0003735|GO:0005840|GO:0006412
Adu10g00142 280 PANTHER 40S RIBOSOMAL PROTEIN SA 12 261 IPR005707 GO:0003735|GO:0006412|GO:0015935
Adu10g00142 280 Hamap 40S ribosomal protein SA [rps-0]. 10 240 IPR027498 GO:0003735|GO:0006412|GO:0015935
Adu10g00142 280 SUPERFAMILY Ribosomal protein S2 18 193 IPR023591 -
Adu10g00142 280 Gene3D - 22 212 - -
Adu10g00142 280 PANTHER 40S RIBOSOMAL PROTEIN SA 12 261 - -
Adu10g00142 280 CDD RPS2 26 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Adu10g00142 280 Pfam Ribosomal protein S2 106 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Adu10g00142 280 ProSitePatterns Ribosomal protein S2 signature 2. 112 136 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00142 Adu-Chr10 2104028 2106407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00142 5 260 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 68.266 7.78e-131 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00142 K02998 - gmx:100786575 395.586