Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g03112 ATGGCGGCAGCGGCAGCGATTTCTGCACCGGTGGCTCAGTCTACGGCGGCTCCGGCGGCGGCATTGGGCGTAGGGCCATTCTCCAATGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGAGGGGAACGTGAACGAGGCGCAGCTTTATGATCTGTTCAGTCAGATTGCTCCGGTTGTCTCGATTAGGGTTTGCAGGGATCTTACGAAGCGATCCTCTCTCGGTTATGCTTATGTCAACTATTCCAGCTATGAACATGCTGCAAATGCCATGGAGCTTCTGAACTTTACTCATTTGAATGGGAAACCCATTCGAATTATGTTTTCCCAACGTGATCCTAGCATTCGGAAAAGTGGATTTGCCAATGTGTTCATCAAGAACCTTGATACGTCAATCGACAACAAGGCATTACATGACACATTTGCTACTTTTGGAACTGTGCTTTCTTGCAAGGTTGCCATTGATAGCAATGGAAATTCAAAAGGCTATGGTTTTGTACAATTTGAAAAGGAAGAAGCCGCTCAAAATGCCATCAAACAGTTGAATGGCATGCTGATAAATGATAAACAGGTTTTTGTGGGACTCTTTGTTCGACGCCAGGAAAGGGCTCAAACAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTGTCTGAAACACAAACTGATGACAACTTGAAGCAACTGTTTAGCCCATATGGTACAATAACAAGTGCAACAGTTATGAAAGATATGAATGGGAAGTCTAGATGTTTTGGTTTTGTTAATTTCCAGAGTCCGGATTCAGCGGCTGCTGCAGTTGAGAAGTTAAATGGAACTACGATCAATGATGACAAGGTTTTATACGTGGGGAGAGCTCAGAGGAAAGCTGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGATTAAGCAGATATGAGAAGTTACAAGGTGCAAACTTGTACTTAAAAAATCTTGATGACAGCATCAACGATGAGAGGTTGAAGGATCTATTTTCTGAATTTGGAACAATAACATCTTGCAAGGTGATGCTTGATCCACATGGGCATAGCAGGGGGTCTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAGATGAATGGGAAGTTGGTTGGGCGGAAGCCTCTGTATGTTGCTGTAGCCCAGCGCAAAGATGAGAGGAAAGCTCGTCTACAGGCACAGTTTGCTCAAATGCAGTCACCTGGTGGAATATCACCTTTGCCCTCAGGAATTCCTGGGTATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAGCTGTATTTTGGTCAAGGAACACCTGGCTTCATGCCACCACAACCTGCTGGCTTTGGTTTCCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGCGTTGCTCCAAATTTTGTTATGCCATACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGAATGGGCATTCGACGAGGGGGAAACCTCCAACAAGTGCAGCAGAACCAGATGCTGCATCGCAACTCCAACCAAGGGTTTAGATATATGGGAAATGGCAGAAATGGTATGGATCCATCCGTTCCTCAAGGTCTAGTTGGTCCAATGATGCCCATGTCCTTTGATGGATCTGTATCTCCTATTGATAACCAGCGCCCTGGAACATTGTCTACCACCCTTGCCTCTGCTCTGGCTTCTGCAACCCCAGAAAATCAGCGAGTGATGCTGGGTGAACATCTGTATCCTCTTGTGGAGCGTCTTACTCCAACTCAACACACGGCAAAGGTGACGGGCATGTTGCTGGAAATGGACCAGTCAGAGGTAATCCATCTCATTGAGTCCCCTGAGGACCTAAAGATTAAGGTCTCCGAGGCAATGCAGGTCCTTCGCGAAGCTGCCACGGGTTCTGATGTTGGTGATCAGCTGGGCTCATTGTCATTGAATTAA 1962 0.4536 MAAAAAISAPVAQSTAAPAAALGVGPFSNAXXXXXXXXXXXXXXXXLEGNVNEAQLYDLFSQIAPVVSIRVCRDLTKRSSLGYAYVNYSSYEHAANAMELLNFTHLNGKPIRIMFSQRDPSIRKSGFANVFIKNLDTSIDNKALHDTFATFGTVLSCKVAIDSNGNSKGYGFVQFEKEEAAQNAIKQLNGMLINDKQVFVGLFVRRQERAQTNGSPKFTNVYVKNLSETQTDDNLKQLFSPYGTITSATVMKDMNGKSRCFGFVNFQSPDSAAAAVEKLNGTTINDDKVLYVGRAQRKAEREAELKAKFEQERLSRYEKLQGANLYLKNLDDSINDERLKDLFSEFGTITSCKVMLDPHGHSRGSGFVAFSTPEEASKALNEMNGKLVGRKPLYVAVAQRKDERKARLQAQFAQMQSPGGISPLPSGIPGYHPGAPRLAPQQLYFGQGTPGFMPPQPAGFGFQQQILPGMRPGVAPNFVMPYHLQRQGQPGQRMGIRRGGNLQQVQQNQMLHRNSNQGFRYMGNGRNGMDPSVPQGLVGPMMPMSFDGSVSPIDNQRPGTLSTTLASALASATPENQRVMLGEHLYPLVERLTPTQHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLREAATGSDVGDQLGSLSLN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g03112 653 PANTHER RNA BINDING PROTEIN 46 642 - -
Adu09g03112 653 CDD RRM2_I_PABPs 126 201 IPR045305 -
Adu09g03112 653 Gene3D - 203 315 IPR012677 -
Adu09g03112 653 SUPERFAMILY PABC (PABP) domain 506 638 IPR036053 GO:0003723
Adu09g03112 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Adu09g03112 653 PANTHER POLYADENYLATE-BINDING PROTEIN 46 642 - -
Adu09g03112 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Adu09g03112 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Adu09g03112 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 288 IPR000504 GO:0003723
Adu09g03112 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 197 IPR000504 GO:0003723
Adu09g03112 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 393 IPR000504 GO:0003723
Adu09g03112 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 112 IPR000504 GO:0003723
Adu09g03112 653 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 47 635 IPR006515 GO:0003723
Adu09g03112 653 CDD RRM3_I_PABPs 218 298 - -
Adu09g03112 653 Coils Coil 47 50 - -
Adu09g03112 653 Coils Coil 30 30 - -
Adu09g03112 653 SUPERFAMILY RNA-binding domain, RBD 49 208 IPR035979 GO:0003676
Adu09g03112 653 MobiDBLite consensus disorder prediction 416 450 - -
Adu09g03112 653 CDD RRM1_I_PABPs 47 120 - -
Adu09g03112 653 SMART rrm1_1 324 396 IPR000504 GO:0003723
Adu09g03112 653 SMART rrm1_1 220 293 IPR000504 GO:0003723
Adu09g03112 653 SMART rrm1_1 47 114 IPR000504 GO:0003723
Adu09g03112 653 SMART rrm1_1 129 201 IPR000504 GO:0003723
Adu09g03112 653 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723
Adu09g03112 653 Gene3D - 319 422 IPR012677 -
Adu09g03112 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 639 IPR002004 GO:0003723
Adu09g03112 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 118 IPR000504 GO:0003723
Adu09g03112 653 Gene3D - 128 202 IPR012677 -
Adu09g03112 653 Gene3D - 45 127 IPR012677 -
Adu09g03112 653 SMART rrm2_1 129 201 IPR003954 GO:0003676
Adu09g03112 653 SMART rrm2_1 324 396 IPR003954 GO:0003676
Adu09g03112 653 SMART rrm2_1 220 292 IPR003954 GO:0003676
Adu09g03112 653 Coils Coil 292 320 - -
Adu09g03112 653 Gene3D - 560 639 - -
Adu09g03112 653 SUPERFAMILY RNA-binding domain, RBD 218 404 IPR035979 GO:0003676
Adu09g03112 653 MobiDBLite consensus disorder prediction 516 559 - -
Adu09g03112 653 CDD RRM4_I_PABPs 322 400 - -
Adu09g03112 653 SMART poly_2 573 637 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g03112 Adu-Chr9 118948072 118952546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g03112 47 648 Eukaryotic Initiation Factors Gene Family AT1G71770 59.253 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g03112 K13126 - gmx:100783163 1025.77