Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g03009 ATGCCAAATAATAACTCTGAAACGTGTTCATCGCCTTCTAATAACAATAAAGAAATAATGGGGAAACGTTTGAGGTACGAAGAGAACGCAGGGTTTCAGAAGTTCAAAGGCGTTGTTCCTCAGCAAAACGGGCATTGGGGAGCACAAATATACGCAAACCACCAGAGAATATGGCTGGGAACATTCAAGACGGAAAGAGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTAAGAAGCGGCGAAAGCCACAGAAACTTCCCGTGGAACGATCAAACCGTTCAGGAGCCTTATTTCCAGAGCTATTACAGCACGGAAACTGTTCTTACAATGATCAGAGACGGTACATATCCCTCCAAATTTACATCATTTCTTCAAAATCAAAGCCATAAAGAAGAAGCCACAGGAACAATTTATTCCCATAATACGCGCATCAAGATTCGAGGAGGAGAACAGTTTTCTTGCACGCAACTCTTTCAGAAAGAATTAACGCCCAGCGACGTTGGGAAACTGAACAGGCTTGTTATTCCAAAGAAACATGCAGTTACGTATTTGCCCTTTGTTGATGGAAATAACAATAATGCAATGGAAGCAGGGGAATTCGGCGGCGGTGGCGGCGGCGTTGATGTGGAGGTTATGTTTTACGATAAGTTGATGAGATCGTGGAAATTCAGGTACTGCTATTGGAAGAGTAGCCAGAGTTATGTGTTCACGAGAGGGTGGAACCGTTTCGTGAAGGACAAGAAACTCAAGGCTAAAGACGTCATTGCATTTTACATGTGCGAGCCTGTGAATAATGAAGTTCATCAGCACCGTCTGTTTGGGTTGATCGATGTGATTTATAATAATACGGAAAATGTTGAAGCCACAAAACGAGAGGTAATTGGGAAGAGTACTACTAGGTTAGCTTGCAGTGAAGTAGTTGTAGAAGATATGGAAGAAGAAGATGAAGACAGAGAAGAAGAAGAAGAACATAAAGTTGATGGAATGGATTTGAATCCACCACACAAAGGTGTGAAGCTATTTGGCGTATCTATCAACTGA 1047 0.4288 MPNNNSETCSSPSNNNKEIMGKRLRYEENAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSYYSTETVLTMIRDGTYPSKFTSFLQNQSHKEEATGTIYSHNTRIKIRGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPFVDGNNNNAMEAGEFGGGGGGVDVEVMFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFYMCEPVNNEVHQHRLFGLIDVIYNNTENVEATKREVIGKSTTRLACSEVVVEDMEEEDEDREEEEEHKVDGMDLNPPHKGVKLFGVSIN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g03009 348 SUPERFAMILY DNA-binding pseudobarrel domain 158 273 IPR015300 -
Adu09g03009 348 Pfam B3 DNA binding domain 160 263 IPR003340 GO:0003677
Adu09g03009 348 SMART rav1_2 34 95 IPR001471 GO:0003700|GO:0006355
Adu09g03009 348 CDD B3_DNA 159 261 IPR003340 GO:0003677
Adu09g03009 348 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Adu09g03009 348 SMART B3_2 160 281 IPR003340 GO:0003677
Adu09g03009 348 ProSiteProfiles B3 DNA-binding domain profile. 160 275 IPR003340 GO:0003677
Adu09g03009 348 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Adu09g03009 348 Gene3D AP2/ERF domain 33 90 IPR036955 GO:0003700|GO:0006355
Adu09g03009 348 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 6 348 - -
Adu09g03009 348 ProSiteProfiles AP2/ERF domain profile. 34 89 IPR001471 GO:0003700|GO:0006355
Adu09g03009 348 Gene3D - 155 282 IPR015300 -
Adu09g03009 348 Pfam AP2 domain 34 80 IPR001471 GO:0003700|GO:0006355
Adu09g03009 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 6 348 IPR044800 GO:0003700
Adu09g03009 348 MobiDBLite consensus disorder prediction 313 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g03009 Adu-Chr9 117701599 117702645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g03009 30 347 RAV Transcription Factor Family AT1G50680 52.744 5.07e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Adu09g03009 B3 2.3e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g03009 K09287 - qsu:111998385 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g03009 09 117701599 117702645 Adu09g03009 09 117701599 117702645 ECH