LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02971	ATGTGGATTTTAGGTGCAGATAAGAGTGTTATTACTATCATGTGTCTCCACATCTTATGTTTATTACTTCTATTGAAAGTAAATGCAAAAGAAGAATCATATGAATCTGATGATAGAGTCATAAATCTTCCTGGTCAGCCTTCAAGCCCATCAGTTTCACACTTCTCAGGTTATATCACTGTCAATGAAGATCATGGGAGGGCCCTCTTCTACTGGTTCTTTGAAGCTCAATCTGAACCTTCCAATAAGCCCCTCCTTCTTTGGCTCAATGGAGGACCTGGATGTTCCTCCATTGGTTATGGTGCAGTTGTTGAGGTAGGACCTCTTATCATCAACCAAAATGGTGATGGTCTGCATTTCAACCCATATTCTTGGTATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCAGTTGGAGTTGGTTTTTCTTACAGCAATACAACTTCTGATTATCTCACCATTTTAGAGGATAATCTTGTGGCTGAGGATTCCTACAATTTCTTGGTGAATTGGCTGCAACAATTCCCACAATTCAAATCCAGGGACTTTTTCATAGCTGGAGAAAGCTATGGTGGGCACTATATCCCCCAACTCGCAGAGCTAGTCTTCGATCGAAACAAAGATAAAAGCAAATACCCTTTTATTAATCTTAAAGGTTTTATTGTAGGGAATCCAAAAACTGATGATTACTATGATAATAAAGGCCTTGTGGAATATGCATGGAGCCATGCAGTTATACCAGACCAACAATATGACAAAGCAAAACAAGTTTGTGATTTTAAGAAATCTGAATGGTCTAATGAATGTAACATTGCCATGAATGAAATCTTCACAGATTACTCAGAGATTGACATATACAACATTTATGCTCCGTCGTGTCGTCTTAATAACTCATTTAACAATAATCATGGCCGGGAACCACTCACAAAGATGATGAGAATTGGAAATAATAATTATAAAGTAAAGAGGATGAGAATTTATTTTGAAGGCTATGATCCATGCTATTCCACATATGCAGAGGAATATTTCAATAGGGTGGATGTTCAATCATCTTTTCATGCAAATATTAGAGGAGGAAATACTAATAATGCAGCATGGAAAGTTTGCAATGATTCCATATTGAGGAGTTACAATTTCTCTGTATTTTCGGTCCTACCAATCTACACAAAACTCATCAAAGGTGGCCTTAAAATATGGATTTACAGTGGAGACACAGATGGGAGAATACCAGTGATAGGGACACGGTATTGGGTTGAAGCTCTGGGATTATCTCTGAAGTCTAGTTGGCAGAATTGGTACCATGACAATCAGGTTGGTGGAAGGATAGTGGAATATGAAGGGCTAACATACGTGACAGTGAGAGGGGCAGGTCACTTGGTACCATTAAACAAACCAAGTGAGGCTCTCTCCCTCATTCATTCTTTCCTTTCAGGCCAACATCTTCCTACTCATCACAAATAA	1461	0.3854	MWILGADKSVITIMCLHILCLLLLLKVNAKEESYESDDRVINLPGQPSSPSVSHFSGYITVNEDHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGYGAVVEVGPLIINQNGDGLHFNPYSWYQEANLLFVESPVGVGFSYSNTTSDYLTILEDNLVAEDSYNFLVNWLQQFPQFKSRDFFIAGESYGGHYIPQLAELVFDRNKDKSKYPFINLKGFIVGNPKTDDYYDNKGLVEYAWSHAVIPDQQYDKAKQVCDFKKSEWSNECNIAMNEIFTDYSEIDIYNIYAPSCRLNNSFNNNHGREPLTKMMRIGNNNYKVKRMRIYFEGYDPCYSTYAEEYFNRVDVQSSFHANIRGGNTNNAAWKVCNDSILRSYNFSVFSVLPIYTKLIKGGLKIWIYSGDTDGRIPVIGTRYWVEALGLSLKSSWQNWYHDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLSGQHLPTHHK	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g02971	486	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	13	483	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	Gene3D	-	384	478	-	-
	Adu09g02971	486	ProSitePatterns	Serine carboxypeptidases, serine active site.	185	192	IPR018202	GO:0004185
	Adu09g02971	486	ProSitePatterns	Serine carboxypeptidases, histidine active site.	448	465	IPR033124	GO:0004185
	Adu09g02971	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	121	133	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	134	144	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	171	196	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	448	461	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	SUPERFAMILY	alpha/beta-Hydrolases	36	482	IPR029058	-
	Adu09g02971	486	Pfam	Serine carboxypeptidase	44	478	IPR001563	GO:0004185\|GO:0006508
	Adu09g02971	486	Gene3D	-	334	373	-	-
	Adu09g02971	486	Gene3D	alpha/beta hydrolase	32	303	IPR029058	-
	Adu09g02971	486	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	13	483	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02971	Adu-Chr9	117281992	117285523	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g02971	355	481	Calmodulin-binding Proteins	AT2G22960	31.250	1.76e-14	70.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02971	K16297		-	gmx:100815141	772.696