Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu09g02909 | ATGATTCTTCTGATCCTCTTGGGAAATAATTTGGAAACAACCTCTGCTATATGCTGTGCTTGCAAGGATCCACCTGAAGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGGTAATACATGCTCTGCTCCTGGTTGTAAAGCAGCACTTGCAGAAGATGCTGTTTTCTCCAAGGCTACGTTGAGGAGTTGCTTGTCTGATGAACTTGGTGGTAGTAATTCCATAAAAGTGCATGATTTTGCTCATTCACTAGTGCAGCAGAGTAACTGTTATGCTGATGTCGCTGAAAGAAGGAAATCTTGGTTTGAATATGGTTGTCATGTTATTCTTTTGGATCCATGGTACAATCAAACAAATGAAGATCAAGCTACTGATCGAGCTCGTAGAATTGGACAGATTCGTCTTGTTACAGTGACACAGCTCACTATAAAAGATACAGTTGAAGACAGAATACTCAGGAAGAGGAGGAAAATGGTTGCATCCACTTTTGGCGACGACAATTCCGACTCTCGCCTTTCAGTGGATGATCTGAAATATCTTTTTGGTGTAGATTCTTAG | 594 | 0.4074 | MILLILLGNNLETTSAICCACKDPPEDPVVTMCGHVFCYQCVSDYLNGDGNTCSAPGCKAALAEDAVFSKATLRSCLSDELGGSNSIKVHDFAHSLVQQSNCYADVAERRKSWFEYGCHVILLDPWYNQTNEDQATDRARRIGQIRLVTVTQLTIKDTVEDRILRKRRKMVASTFGDDNSDSRLSVDDLKYLFGVDS | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu09g02909 | 197 | Pfam | Zinc finger, C3HC4 type (RING finger) | 18 | 54 | IPR018957 | GO:0046872 | |
| Adu09g02909 | 197 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 118 | 193 | - | - | |
| Adu09g02909 | 197 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 5 | 100 | - | - | |
| Adu09g02909 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 18 | 59 | IPR001841 | - | |
| Adu09g02909 | 197 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 119 | 196 | IPR027417 | - | |
| Adu09g02909 | 197 | ProSitePatterns | Zinc finger RING-type signature. | 33 | 42 | IPR017907 | - | |
| Adu09g02909 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 112 | IPR013083 | - | |
| Adu09g02909 | 197 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 118 | 193 | - | - | |
| Adu09g02909 | 197 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 5 | 100 | - | - | |
| Adu09g02909 | 197 | Gene3D | - | 117 | 193 | IPR027417 | - | |
| Adu09g02909 | 197 | SUPERFAMILY | RING/U-box | 16 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu09g02909 | Adu-Chr9 | 116714593 | 116716993 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu09g02909 | 4 | 179 | RAD5 or RAD16-like Gene Family | AT3G16600 | 39.810 | 1.11e-41 | 146 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu09g02909 | - | - | adu:107467300 | 345.895 |