Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02887 ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCTAAGCCGTACTTCTGTCACGTTTGCACCCGGAGAATCACCGTCTCCGACGAATCCGAGCCTTTCTGTCCGATTTGCCTCCAAGGCTTCGTTGAAGAATTCACCGATCCCAACCCTAACCCTAACGAAAACATCTCCTTCAGTTTCGGCCCCGATCCTTCCTCCGATGCTCAACTCCCCTTCCATCCTTTGTCCTTCCTCCCTTTCCTGCTCTCCTCCGCCGCCGCCGCCTCCACCACCATCGACCTCCAGAACCCTCGCATCTTCTCCAGTTCCTCCGGATCCACGCCGCGACATGAATTTATTCGATCCGATATGTTCGACCCGTTTATGTTTCTCCAGAACCACCTCCAAGGCCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCAGACCCAGGGTTTCGCCTTCCGGCGAACATCGGCGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAATGATCCCAACCGTTATGGTACCCCGCCGGCGTCGAAGACCGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCTGAGCATAACCAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGTAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTACACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCAACCGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGACGGTGGTGGTGATGGTTCGAGGTCTGGCGGTGGCGGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGACGCTTCTGGGGAGGATGGGAAAGTAGGCAAGAAGATTTGGATTGAACCGAAGGAGATGTATCATTTCGTGTTGGAAAATTGGAAATTATCCCCTCGCATTGCTCTATTTATGGAAGTTCTTGTCTCTCCAAACCCGCCGTTCACCCTCTTCATCTATAGAGATACTAGGCACTGTTATACTAGGTATAATGAAGTGTATTGGTTGGAGCCGGGGATGGATTTAGCTAATGGGCTACGGGTGTTGAGAAGGGATGCCGATGTGGTTAAATTGTGTGATGCTGCACTGAAGAATAAAAACAGGATCCACTTGTATTTTGAGTATCCTGTTGACGCCAATCCAGAGTTAGTTGATGAAGTTGAGGGACCTCCTTCAGAAGACCAGCAAAATCATGACCAGGATCTCCCACAGAATGATGAACATGGAGGACCAGATGATATAGTAGTTGATGGAGCTATTTCAGAAATTCAGGAAACTCATGAAGATGATCCCCCACAGTACGAGGAGCAACAGCAACAGAAGGGTGAATCAGTGTTGAGTAATGGGGGGAATGATCAATCGGAGAAAGGTGACGTAGGTACTGATAACGTACCCATTGAAACTGAGGCTGCAACTGTTGAAAATGAGGAACCCAATTTAGAAAATAACCATGAGACACACGTTGAAGGCGAAAAGGGGCAATCTCAGCGTCAGGAAGCTGAAGGCCGGGGAAGAAAGCGCAGGAAGAAACATGGAAGGCCCCAACCGTCTGGTAGAGCGCAACCTGATGCACAGAACAATGGTGACGAACAACCAGGTCGGAGGCATCATCCAAGATCTCCTCCATCAGGTCAGAAGATTCTGCCACCCAGGGAGGAGAATCAGGCTCCAAGGGTGGTTGTTCCTAACCAAAATGACCCTGATGCTGGGCCAACTGAATATCAGTACTAG 1800 0.52 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPICLQGFVEEFTDPNPNPNENISFSFGPDPSSDAQLPFHPLSFLPFLLSSAAAASTTIDLQNPRIFSSSSGSTPRHEFIRSDMFDPFMFLQNHLQGLRADGANVQFEINHPSDPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGDGGGDGSRSGGGGGGGGGGGGGGDASGEDGKVGKKIWIEPKEMYHFVLENWKLSPRIALFMEVLVSPNPPFTLFIYRDTRHCYTRYNEVYWLEPGMDLANGLRVLRRDADVVKLCDAALKNKNRIHLYFEYPVDANPELVDEVEGPPSEDQQNHDQDLPQNDEHGGPDDIVVDGAISEIQETHEDDPPQYEEQQQQKGESVLSNGGNDQSEKGDVGTDNVPIETEAATVENEEPNLENNHETHVEGEKGQSQRQEAEGRGRKRRKKHGRPQPSGRAQPDAQNNGDEQPGRRHHPRSPPSGQKILPPREENQAPRVVVPNQNDPDAGPTEYQY 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02887 599 MobiDBLite consensus disorder prediction 450 599 - -
Adu09g02887 599 MobiDBLite consensus disorder prediction 406 437 - -
Adu09g02887 599 Pfam Ring finger domain 207 250 IPR001841 -
Adu09g02887 599 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Adu09g02887 599 MobiDBLite consensus disorder prediction 257 295 - -
Adu09g02887 599 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 318 - -
Adu09g02887 599 PANTHER OS06G0101300 PROTEIN 9 318 - -
Adu09g02887 599 SUPERFAMILY RING/U-box 188 257 - -
Adu09g02887 599 MobiDBLite consensus disorder prediction 460 481 - -
Adu09g02887 599 MobiDBLite consensus disorder prediction 501 525 - -
Adu09g02887 599 MobiDBLite consensus disorder prediction 414 436 - -
Adu09g02887 599 CDD RING-H2_RNF126_like 208 250 - -
Adu09g02887 599 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Adu09g02887 599 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Adu09g02887 599 SMART ring_2 209 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02887 Adu-Chr9 116530018 116534690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02887 153 265 C3H Transcription Factor Family AT5G01980 48.673 4.54e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02887 K11982 - ahf:112709563 473.781