Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02850 ATGGATCTTAGTTTTTGTTTCTCCTGCTTCTTGTTTGTTTGTTATTCAATTTCTCTTCTCTTGGTCTTAGTCAAAGGAATCATTAGTAGTATTCTTAAACACTTTGCATTTGGGAGTTCAAAGAAGGACTTCTACTATCATCTCCTTCCATCAGGTGACAAGAACATGAACATGATGATGATGCAAAACTTAATTGAGAGACTGAGGCCTCTTGTTGGATTGAACGGTTGGGACTACTGTGTATACTGGAAACTAAGTGAAGATCAAAGGTTTGTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGATCAAAACAATAATGTTGGGGAAGACATTCACATTTTCCCATGTAGGGATACCATGTTCTCACATCCCAGAACTAACCATTGTTATCTTCTTTCTCAGCTTCCTACTTCCATTTCCATCATAGATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAATTGGGTCAACTATTCCCCAAATATCTTGCAAGAAACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTACCTGAAGATCATCAAGTAATTGATTTTGTGACAGCACAATGCATTGTATTGGTAGAGCAAGAAGCAGCAAACAACTCAACAAGTTTCAACATGCAATCAAATGTTGTTGGAGATGATAATAATAATAATCATAATAATAATAATAATGAAAATCAAGTGATGATGAACAACAACAACAACAGCAATAATCAGTTTGTTCTCACAACTGCACCAGAAACTTCACCACATGATGAAATCCCCATCACTCTATGCAGTTCTCCACTCAACTTCATGCAACAGTTCAGAACAATGAATAAGAACAACGATAACAACAATAACAACAATGCATTTTCTGAAGAATATCAAGGTTCAATATTCCTCCATGAAAACCAAAACAACAATAACCAGCCAATGAAAGCAGCAGCAATGGAGGAAGAAGAAGAAGAAGAGCAGCAAGTGGGGACAAAGGAGAATAACAACAACAACAAAAATGAAGGAGGAGTTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAACGAAGAAGAGGAAGATGGAAAATACAGAAGGAGGAATGGAAAAGGGAACCAGTCAAAGAACCTTGTTGCTGAAAGAAAGAGAAGGAAGAAACTGAATGACAGGCTGTACAATCTTCGTTCATTGGTTCCAAGAATATCCAAGCTTGATAGAGCTTCCATTCTTGGCGATGCAATTGAGTTTGTTAAGGATTTGCAAAAGCAGGTCAAGGATCTTCAAGATGAACTTGAGGACAATAACAACAATTCTGACACTACTGCTGTTGATCATCATGATAGTAGCAACCAGTTTCTTGATCATTTCGGAGCATCCTATGTTGTCCCAAATCACAAGCATATGCAGCAAGATGCAGTGGATGCCACTACTCTTACCATGGACAAGCAGCACTCCCAACAAATGGAGCCTCAAGTGGAAGTGGCAGTGATAGATGGGAAGGAGTACTTTGTGAAGGTATTCTGTGAACACAGAGCAGGTGGATTTGTGAAATTGATGGAGGCACTCAACACCTTAGGCATGGATGTTGTACATGCCACTGTCACTAGCCACAAAGGCCTTGTCTCTAATGTCTTCAAAGTTGAGAAAAAGGATAGTGATATGGTGGAGGCTGAAGATGTGAGAGACTCATTGCTAGAGCTTACAAGGAACCCATCATGTAGGGTTTGGAGTAATAATAATACAAAGAATAATAATCCCACATCGGAGAATTCCAATGGTGTTGCTGTGGGAAGGGATCATCATCATCATCATCATCATCACATGCCCGCATATCATCCCCATCCATTTCATACTTAA 1896 0.3972 MDLSFCFSCFLFVCYSISLLLVLVKGIISSILKHFAFGSSKKDFYYHLLPSGDKNMNMMMMQNLIERLRPLVGLNGWDYCVYWKLSEDQRFVEWLGCCCGGTDQNNNVGEDIHIFPCRDTMFSHPRTNHCYLLSQLPTSISIIDSGIHAQTLLTNQPNWVNYSPNILQETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTAQCIVLVEQEAANNSTSFNMQSNVVGDDNNNNHNNNNNENQVMMNNNNNSNNQFVLTTAPETSPHDEIPITLCSSPLNFMQQFRTMNKNNDNNNNNNAFSEEYQGSIFLHENQNNNNQPMKAAAMEEEEEEEQQVGTKENNNNNKNEGGVVGVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNSDTTAVDHHDSSNQFLDHFGASYVVPNHKHMQQDAVDATTLTMDKQHSQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRNPSCRVWSNNNTKNNNPTSENSNGVAVGRDHHHHHHHHMPAYHPHPFHT 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02850 631 CDD ACT_UUR-ACR-like 517 580 - -
Adu09g02850 631 MobiDBLite consensus disorder prediction 588 607 - -
Adu09g02850 631 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 203 IPR025610 -
Adu09g02850 631 CDD bHLH_AtAMS_like 387 453 - -
Adu09g02850 631 Pfam Helix-loop-helix DNA-binding domain 391 434 IPR011598 GO:0046983
Adu09g02850 631 MobiDBLite consensus disorder prediction 588 631 - -
Adu09g02850 631 MobiDBLite consensus disorder prediction 611 631 - -
Adu09g02850 631 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 384 433 IPR011598 GO:0046983
Adu09g02850 631 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 148 589 - -
Adu09g02850 631 SMART finulus 390 439 IPR011598 GO:0046983
Adu09g02850 631 MobiDBLite consensus disorder prediction 324 395 - -
Adu09g02850 631 Coils Coil 423 450 - -
Adu09g02850 631 Gene3D - 373 450 IPR036638 GO:0046983
Adu09g02850 631 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 448 IPR036638 GO:0046983
Adu09g02850 631 MobiDBLite consensus disorder prediction 230 257 - -
Adu09g02850 631 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 148 589 - -
Adu09g02850 631 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02850 Adu-Chr9 116179123 116183001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02850 61 618 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 42.409 1.91e-128 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu09g02850 bHLH-MYC_N 5.8e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02850 - - aip:107616200 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02850 09 116179123 116183001 Adu09g02850 09 116179123 116183001 ECH