Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02843 ATGTCTTCTCATCTTCACCAAGGGAATGCTGTCATGTCTATTCTCTTCTTCAAGATTATACTCAAAACTAACCTTAAAAGTCTTAAAATACCCGACAAATTTGCACTGAAATATGGAAGTGGTTTGTCCAATCCAGTGTCCTTAAAGCCTCCAGATGGAACAAGGTGGAATGTGTGTTTGAGAAAAAAGAATGATCAAGTTTGGTTTGAAAAAGGTTGGAAAGAATTCACTCAAAAGTACTCTCTGAATCATGGATGCTTGGTTCTGTTTAAATACGAAGGAACTACTTCCCAATTTGATGTCATTATCATTGATGACGGTGCTTTAGAAATGGACTATTCTTCCTACAATGGAAATGATAACGATGATGTTTCAGTTCAGATTGTAAAGGAAATCCATCCATGCAAGAAGAACAAAAAAACCATGAGAGATGAGAAGGATGTGACTACTTCTTTGTCATTGAATTGGCCAAGGGAACCAAGAGCACGACAAGAAGCTAACAAATTCGTATCTAACAACCCTTTTTTTACTGTGCTCATAAAGCCTCCTCATATCACAGAATACCGACTGTGCATACCAGGTTTGGAAGGTTATGTGGATAATGGAGTGAAGAATGTGAAGCTTGAGTATGGGGATAGATCGTGGCCTGTGAAGATGCTTAATTGTAACAAAACCTATTCAAATCGCTTCCTTTCTGCTGGGTGGAACTTGTTTGCACAAGAGAATGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTCTTTAAGGTTCATGTTTTTGCTGCCCATCATGTTTAA 819 0.3797 MSSHLHQGNAVMSILFFKIILKTNLKSLKIPDKFALKYGSGLSNPVSLKPPDGTRWNVCLRKKNDQVWFEKGWKEFTQKYSLNHGCLVLFKYEGTTSQFDVIIIDDGALEMDYSSYNGNDNDDVSVQIVKEIHPCKKNKKTMRDEKDVTTSLSLNWPREPRARQEANKFVSNNPFFTVLIKPPHITEYRLCIPGLEGYVDNGVKNVKLEYGDRSWPVKMLNCNKTYSNRFLSAGWNLFAQENELKPGDVCVFELVNMQDLVFKVHVFAAHHV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02843 272 ProSiteProfiles B3 DNA-binding domain profile. 175 270 IPR003340 GO:0003677
Adu09g02843 272 PANTHER B3 DOMAIN-CONTAINING 12 269 - -
Adu09g02843 272 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Adu09g02843 272 SMART B3_2 16 107 IPR003340 GO:0003677
Adu09g02843 272 SMART B3_2 175 268 IPR003340 GO:0003677
Adu09g02843 272 Gene3D - 12 107 IPR015300 -
Adu09g02843 272 Gene3D - 157 271 IPR015300 -
Adu09g02843 272 Pfam B3 DNA binding domain 24 99 IPR003340 GO:0003677
Adu09g02843 272 Pfam B3 DNA binding domain 175 268 IPR003340 GO:0003677
Adu09g02843 272 CDD B3_DNA 175 267 IPR003340 GO:0003677
Adu09g02843 272 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 269 - -
Adu09g02843 272 CDD B3_DNA 15 105 IPR003340 GO:0003677
Adu09g02843 272 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Adu09g02843 272 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02843 Adu-Chr9 116118478 116120238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02843 161 267 B3 DNA Binding Superfamily AT3G18990 39.286 1.62e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu09g02843 B3 1.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02843 - - lang:109346569 265.003