Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02820 ATGACAAAAACAGTGTCATTCAGCCCCCCTTCCTCCAATCAACCATCAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGGAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCTCGTGCTCTTGGTGACCTCACTGGCATCAAGAAGCACTACTCTCGCAAACATGGCGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAGTACGCTGTTCAATCCGATTGGAAAGCTCATTCCAAGACCTGTGGCACTAGAGAATACAGATGTGATTGTGGAACTCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGAGCTTTCTGCGATGCATTGGCTCAAGAAAGTGCAAGGCAGCCACCGAACCTGAACAACGCCATTGGAACCCACCTTTATGGAAGCACCAACAACAACATGGCCCTAGGCTTATCTCAGGTGGGTATGGGTATGGGTGTTGGTGTTGGTGTTGGTGTAGGTGTAGGTGTGGGTGTGGGTCCACAACAGATACCCACCGCCATGCAAGAATCTAGCACTGATCTCTTGCGTCTTAGTGGTCGAACCGGTCAATTAGACCATCACATGCTTCCACCACCACCATCATCCTTTAGAACTTCACACCATCAACCATTCTTCATGAATGATCATCAAAACTTCCATGGCCACCAGGGACTCATGCACCTATCTGATCTTAACAACAATAACAACAACAGCATGGATAATAATTCTCCATCAGGAGGAGGAGGAGGAGCTAATAATAATAGTAGTAACAACAACAATAATAATAATAATAACAGTAACCTCTTCAACCTTCCATTCCTTTCAAGCAACAGCACTAACAGCAGCAACAACTCTTTCTCTGATCAGCATGGTAACAACAACAACAACAATGAAGGGAACAACAGTTTCTTCACCGGTGCAGGTGGAAGTGCTATAATGCACCAAACAACCTCATCAACTGCACCATCACTCTTCAGCAATTCCCTCGAAACAAACAACAACAACAACAACAGCGGTTCCATTTCTCACATGTCCGCAACTGCACTCCTTCAGAAGGCAGCACAGATGGGTGCAACTACAAGCAACAGCACCGCCTCACTCCTCAAGAGCTTCGGC 1266 0.4684 MTKTVSFSPPSSNQPSDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLNNAIGTHLYGSTNNNMALGLSQVGMGMGVGVGVGVGVGVGVGPQQIPTAMQESSTDLLRLSGRTGQLDHHMLPPPPSSFRTSHHQPFFMNDHQNFHGHQGLMHLSDLNNNNNNSMDNNSPSGGGGGANNNSSNNNNNNNNNSNLFNLPFLSSNSTNSSNNSFSDQHGNNNNNNEGNNSFFTGAGGSAIMHQTTSSTAPSLFSNSLETNNNNNNSGSISHMSATALLQKAAQMGATTSNSTASLLKSFG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02820 422 MobiDBLite consensus disorder prediction 239 388 - -
Adu09g02820 422 Pfam Zinc-finger double-stranded RNA-binding 36 58 IPR022755 -
Adu09g02820 422 Gene3D Classic Zinc Finger 90 169 - -
Adu09g02820 422 Gene3D Classic Zinc Finger 12 84 - -
Adu09g02820 422 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 14 422 - -
Adu09g02820 422 SMART c2h2final6 77 107 IPR013087 -
Adu09g02820 422 SMART c2h2final6 36 58 IPR013087 -
Adu09g02820 422 SMART c2h2final6 112 132 IPR013087 -
Adu09g02820 422 MobiDBLite consensus disorder prediction 277 388 - -
Adu09g02820 422 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Adu09g02820 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 422 - -
Adu09g02820 422 SUPERFAMILY beta-beta-alpha zinc fingers 35 132 IPR036236 -
Adu09g02820 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02820 Adu-Chr9 115900339 115905522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02820 13 198 IDZ Gene Family AT2G02070 81.633 1.45e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu09g02820 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02820 K25870 - gmx:100799389 420.624