Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02809 ATGGCGGTGGGAATATCAGTTCTGATAGCACTGAAAGCGACGGCGCTATTACTGTGCTTCGTGTACCTGAAGAACCATGGCTACACCCTCATCTCCGCGCCATTCCTCTACGCATCACTCGTTTCGTTCTTGGTCTCGATCGCATCTCACCCCTCCATTGACCTTCCCATGCTTTTAGGAAAGGACACCGATGGAACCTTCCCAATCTGGTCCCTCATGATGTTCAGCCCTTACTTGTACTTCGTCAGAGTCTTCTCCGCGCTTCGAAGGCTCCGAAGCGGTGAACCACCGTACACTGAAGTCCACCCTGGACTCTTCGTCGGAGGGTGGCCATCGTCGCGCCAGAAGCTGCCACCTGGCGACCCTGCCATCGTTGATTGCACCTGCGAGTTCCCGAGGTTGGAGGAGTTCTCTGGGCTTCCTTATCTGTGCATTCCCACATGGGATACAAGGTCACCCAAGCCCTCTGATATTGAATCTGCTGTTAAGTGGGCTTCTAAGAAGAGAGACCTCAATAAACCTATTTTTATTCACTGTGCTTATGGTCATGGAAGAAGTGTTGCTGTTATGTGTGCATTGCTAGTGGCACTGGGTATTGCAGAGGATTGGAAGAATGCTGAGAAGCTGATCAAACAAAAACGGCCTTACATCCGGATGAATGCCCTCCATCGCAAGGCTCTTGAAGAATGGTCCAAGCACAGGTCACTTTCAATTTTTGCGATCTTGACTTCAACCCTTTCGCCTCTCTCTCTCTCTCTCACTCTATATATAACCCCCTCTTCTCGCATCTTCCTTCGCGCACACTTCCCAGCACTTAACTTCATCGCTTCAATTATTCAGGTGAAAATGTCAATTGTGAACCTGTCCACTGTGAGAATTCCAGCAGCTTCCTTGAATGGAGCAACAACTCCAAGGAGATCTTGTGCTCTTATTAAGAGTTCATCATCTTTGAGCTCAGTGAAGAACGCCTCCAAAGTATTCGGATTGAAATCTTCCTCCTCCTTTAGAGTGTCTGCGATGGCAGTATACAAAGTGAAACTGATTGGGCCCGATGGCGAAGAGAACGAATTTGAAGCCCCCGATGACTCCTACATTTTGGATTCGGCCGAGAATGCTGGGCTCGAGCTGCCTTACTCGTGCAGGGCCGGTGCCTGCTCTACTTGTGCTGGCCAAATAGTTTCGGGCTCTGTGGATCAATCTGATCAATCCTTTTTGGATGACCAGCAAACGGAAAAGGGTTATCTCCTCACATGTGTCTCATACCCAAAATCTGATTGTGTCATTTACACCCATAAGGAGGGCGATCTATGCTAA 1314 0.4901 MAVGISVLIALKATALLLCFVYLKNHGYTLISAPFLYASLVSFLVSIASHPSIDLPMLLGKDTDGTFPIWSLMMFSPYLYFVRVFSALRRLRSGEPPYTEVHPGLFVGGWPSSRQKLPPGDPAIVDCTCEFPRLEEFSGLPYLCIPTWDTRSPKPSDIESAVKWASKKRDLNKPIFIHCAYGHGRSVAVMCALLVALGIAEDWKNAEKLIKQKRPYIRMNALHRKALEEWSKHRSLSIFAILTSTLSPLSLSLTLYITPSSRIFLRAHFPALNFIASIIQVKMSIVNLSTVRIPAASLNGATTPRRSCALIKSSSSLSSVKNASKVFGLKSSSSFRVSAMAVYKVKLIGPDGEENEFEAPDDSYILDSAENAGLELPYSCRAGACSTCAGQIVSGSVDQSDQSFLDDQQTEKGYLLTCVSYPKSDCVIYTHKEGDLC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02809 437 CDD DSP_bac 94 232 - -
Adu09g02809 437 Pfam Dual specificity phosphatase, catalytic domain 124 232 IPR000340 GO:0008138|GO:0016311
Adu09g02809 437 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 156 225 IPR000387 GO:0016311|GO:0016791
Adu09g02809 437 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 232 IPR029021 -
Adu09g02809 437 SMART dsp_5 97 233 IPR020422 GO:0006470|GO:0008138
Adu09g02809 437 Pfam 2Fe-2S iron-sulfur cluster binding domain 350 423 IPR001041 GO:0051536
Adu09g02809 437 Gene3D - 340 437 IPR012675 -
Adu09g02809 437 PANTHER - 3 235 - -
Adu09g02809 437 PANTHER OS01G0859400 PROTEIN 3 235 - -
Adu09g02809 437 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 380 388 IPR006058 GO:0051537
Adu09g02809 437 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 343 434 IPR001041 GO:0051536
Adu09g02809 437 CDD fer2 345 428 IPR001041 GO:0051536
Adu09g02809 437 Gene3D Protein tyrosine phosphatase superfamily 98 235 IPR029021 -
Adu09g02809 437 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 341 436 IPR010241 GO:0009055|GO:0022900|GO:0051537
Adu09g02809 437 SUPERFAMILY 2Fe-2S ferredoxin-like 338 433 IPR036010 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02809 Adu-Chr9 115791920 115797235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02809 133 235 Protein tyrosine phosphatase (PTP) family AT5G56610 28.972 9.23e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02809 - - aprc:113873203 417.542