Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02672 ATGTCTTCTTCATCACTCGGCGGCTATCCTCCGTCGGATTTTTCCTGCTCGCGTTCGTCTTGTCGCCGTCGTCTCGGCGTCATTGTCTCGAAGGCACCTATTGAGATGGTTGTCCTTGATGAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGACTTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAAGGACACGATTGTGCGTCTGGTACAGGATTCTTCAGTTCCATTGAACGGATTCAATTTTGTTCCGTTCAAAACAATTCAATCAGAGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCTTCTAAGGGTAACTTGGTCAAATTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAACTTGATGATCTTGAGGGTGGACAGAAATTAAAGGTAACGTTGTGGCAGTCTTTTGCTTTTGAATTGCTCAAATATCTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGACAAGATGAAATTTTATAGCGGGGTCATGGGTGTATCCAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTTTAGCTGTCAGAGATTTCTTTACGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGATCAACCTGTTTCAGATGAGGAAGATTTTTTACGTCTATCAGTCTACAAAACAATTGCAGAGTTAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGCCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGACTTGAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTTGATGGAGAAGTTGCAAAGTTTCTTGGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCAAAGAAATTAATAAACTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGATCTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCACACGACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAGATTGGAGAGGAGTGGGTTGTGGTGGAGGACTAA 1488 0.416 MSSSSLGGYPPSDFSCSRSSCRRRLGVIVSKAPIEMVVLDEEGDTIQCTVKDIFVPIFEDLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKKDTIVRLVQDSSVPLNGFNFVPFKTIQSESKEDGYLVDVIGQLASKGNLVKFTRDGKPSSYITIELDDLEGGQKLKVTLWQSFAFELLKYLEEHPCLTYVVILQMDKMKFYSGVMGVSNTNYNSKLFINVEFLAVRDFFTRVNKLDPVDGQGIMPLVCDQPVSDEEDFLRLSVYKTIAELKEHNQDAVFVTAGTIKEVETEFGWWYKGCKKCRRDLRELEKRYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEVAKFLGVSANDLRQSCVTKGVEKNSCPKEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLISAFLDKYNPDTGLLSHENSELLSLSTGPHDTSKACESEPTPSPAVDEKHNSKILGAKKHIEEIGEEWVVVED 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02672 495 PANTHER REPLICATION FACTOR A 1, RFA1 39 431 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu09g02672 495 Gene3D - 106 240 IPR012340 -
Adu09g02672 495 CDD RPA1_DBD_C 271 404 IPR013955 -
Adu09g02672 495 CDD RPA1_DBD_B_like 132 236 - -
Adu09g02672 495 CDD RPA1_DBD_A_like 34 99 - -
Adu09g02672 495 SUPERFAMILY Nucleic acid-binding proteins 34 104 IPR012340 -
Adu09g02672 495 Pfam Replication factor-A C terminal domain 283 405 IPR013955 -
Adu09g02672 495 Pfam Domain of unknown function DUF223 35 125 IPR003871 -
Adu09g02672 495 MobiDBLite consensus disorder prediction 448 474 - -
Adu09g02672 495 SUPERFAMILY Nucleic acid-binding proteins 268 417 IPR012340 -
Adu09g02672 495 Gene3D - 261 429 IPR012340 -
Adu09g02672 495 PANTHER BNAC07G49340D PROTEIN 39 431 - -
Adu09g02672 495 SUPERFAMILY Nucleic acid-binding proteins 112 234 IPR012340 -
Adu09g02672 495 Gene3D - 29 105 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02672 Adu-Chr9 114224795 114229901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02672 38 413 Core DNA Replication Machinery Family AT5G08020 24.103 8.20e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02672 - - adu:107477146 870.922