Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02571 ATGTCTACTGCTAGGAAAAGCCGTGGTCGCCAAAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAACCTTCAAGTCACATTTTCCAAGCGCCGTGGTGGGTTGTTTAACAAAGCTAGTGAACTTTGCACTCTCTGTGGTGCTGAAGTGGCAATCATCGTGTTTTCCCCAGGACAGAAGGTCTTCTCCTTTGGCCACCCAAGCGTTCAAACAATCATAGATCGTTACCTCATGCATGCGTCCATGCATAACTCTGGCACCATGCAGTTCATCGAGGCCCAGCGAAGTGCTAGTGTGTGTGAGCTGAACGAACAGCTCACACGAATTAGCAACCAGCTGGATGTCGAAAAAAAACGTAGCGATGAACTAAGCCGCCTTCAGAAAACTGTCATGACACAGTTCTGGTGGGCTTTGTCCATTGAAAACATGGACAAGACCCAACTCAACCAACTGAAGGCGGCTTTAGAAAAACTCAAGAAGAGTGTCATGTACTATGCTGAAAAGCTCCATATTCAAGGCATTGTTGCTAACCCTCCTCAGCCACTCCTTGGTTTGCCATCTTCAAGTGATGTGGTGCATCACCAACCTCCTTTCCCACCACCAACAACTCATCATGTGTCTCAACTATTTGCTTCCCATATTCGTCAACCTCTGATGCTTAACGGCGAGAACCGTTTGATGCATAATCCCATGTTTGCTGATTGGAGCATGTTGCACCAACATGGTTTTAACATCAACACTGGGCTTCAACAAGGGGGAGATCAATTGCGGAGTAGGAAGGGGTGCGACTTGATAACAGGGGAAAGAGCGCCGGGGGGATCAGTTGCTGAGTAG 834 0.476 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRGGLFNKASELCTLCGAEVAIIVFSPGQKVFSFGHPSVQTIIDRYLMHASMHNSGTMQFIEAQRSASVCELNEQLTRISNQLDVEKKRSDELSRLQKTVMTQFWWALSIENMDKTQLNQLKAALEKLKKSVMYYAEKLHIQGIVANPPQPLLGLPSSSDVVHHQPPFPPPTTHHVSQLFASHIRQPLMLNGENRLMHNPMFADWSMLHQHGFNINTGLQQGGDQLRSRKGCDLITGERAPGGSVAE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02571 277 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 Coils Coil 148 168 - -
Adu09g02571 277 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 179 - -
Adu09g02571 277 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Adu09g02571 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Adu09g02571 277 Gene3D - 88 172 - -
Adu09g02571 277 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Adu09g02571 277 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Adu09g02571 277 PANTHER MADS BOX PROTEIN 7 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02571 Adu-Chr9 113299745 113301636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02571 4 189 Type I MADS-box Gene Family AT5G60440 51.323 3.94e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu09g02571 SRF-TF 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02571 - - aip:107616132 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02571 09 113299745 113301636 Adu09g02571 09 113299745 113301636 ECH