Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02567 ATGTTGAAGCAGAAAAAGAAAACAACAGGGAGGAAGAGGATTGAGATCAAGAAGCTTGAGAAAGAAGCAAACAAGCAAGTCACCTTCTCAAAGCGGCGAGCCGGGATGTTTAAGAAAGCCAGTGAGCTATGCATATTATGCAATGCTCACGTTGCCATTATAGTGTTCTCGCCGGCCGACAAGTTGTTCTGCTTTGGAGAACCCAGCACGGAGGCCGTGGTGGAGCGGTACCTGAAAGGATCGCCAGATTTTGAGCCAATAAAGTCCTCCGAAAGGAAGAAGCCGGTGTCGTGCGAAGAGCATAACAGAAAATACGAAGAGGCGATGAAGGCGTTGGAGTTGGAAAAGAAGAACAAGGCTGATGTTGAAGGTTTTGCTAAGGTTTGGGGGAGAGGGGAATGGTGGAATGAAGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTATGAATTGAGGAGTAGGCTTCTTCAAAGGGCTGCTGAAATCATGATGATGCATGGAATGTTATAG 528 0.464 MLKQKKKTTGRKRIEIKKLEKEANKQVTFSKRRAGMFKKASELCILCNAHVAIIVFSPADKLFCFGEPSTEAVVERYLKGSPDFEPIKSSERKKPVSCEEHNRKYEEAMKALELEKKNKADVEGFAKVWGRGEWWNEEIHEMSVEQLEQFLVAIYELRSRLLQRAAEIMMMHGML 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02567 175 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 171 - -
Adu09g02567 175 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 Coils Coil 98 122 - -
Adu09g02567 175 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Adu09g02567 175 Gene3D - 22 102 IPR036879 GO:0003677|GO:0046983
Adu09g02567 175 SUPERFAMILY SRF-like 10 81 IPR036879 GO:0003677|GO:0046983
Adu09g02567 175 CDD MADS_MEF2_like 10 81 IPR033896 GO:0000977|GO:0045944
Adu09g02567 175 PANTHER MADS BOX PROTEIN 7 171 - -
Adu09g02567 175 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02567 Adu-Chr9 113230558 113231085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02567 6 150 Type I MADS-box Gene Family AT5G60440 40.000 1.23e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu09g02567 SRF-TF 5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02567 - - gmx:100814979 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02567 09 113230558 113231085 Adu09g02567 09 113230558 113231085 ECH
Adu05g01339 05 20164393 20165180 Adu09g02567 09 113230558 113231085 PCT