Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02551 ATGGGCTGCCCCCTTTTTCATGACCCTGCTCGAACGCAGAAAATAATGCATCCCTTCCAACACACTACACAAGCCTTGGACTTACCATCAATCCTTTTTTTTGGGCCAAAGTCTAAACCCAAAATGACCCTCTCAGGCCCAGCCATTCCTCTTGTGTCTCAACAGCTCATACTGCTTAACTGTATCGGATTTCTCGTTCTCTCGCAATACCTAGCTCTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGGAAGACTATCACTCTCGAAGTCGAGAGCTCAGACACCATCGACAACGTTAAGGCAAAGATTCAAGACAAGGAAGGCATCCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACACTCGCTGACTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTCCGATACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACACTCGCCGATTATAATATCCAGAAGGAGTCCACACTCCACTTGGTCTTGAGGCTTCGTGGTGGCATGCAGATCTTTGTAAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCCGACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAGCAAAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCATGCAGATCTTTGTGAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCCGACACCATTGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAGCAAAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAATATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCGTCTCCGTGGTGGCATGCAGATTTTTGTTAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTGGAGAGTTCCGACACAATTGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGACCAGCAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGATGGAAGGACCCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTCAGGGGAGGGATGCAGATTTTTGTGAAGACTTTGACCGGTAAGACCATCACCTTGGAGGTGGAGAGCTCCGACACGATTGACAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATCCCACCGGACCAGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAAGATGGAAGGACCCTTGCTGACTATAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTTCGTGGTGGATTTTAA 1596 0.515 MGCPLFHDPARTQKIMHPFQHTTQALDLPSILFFGPKSKPKMTLSGPAIPLVSQQLILLNCIGFLVLSQYLALKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 303 378 IPR000626 GO:0005515
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 227 302 IPR000626 GO:0005515
Adu09g02551 531 CDD Ubl_ubiquitin 151 226 - -
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 379 454 IPR000626 GO:0005515
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 302 378 IPR029071 -
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 150 226 IPR029071 -
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 101 126 IPR019954 -
Adu09g02551 531 Gene3D - 455 531 - -
Adu09g02551 531 Gene3D - 303 378 - -
Adu09g02551 531 Gene3D - 151 226 - -
Adu09g02551 531 Gene3D - 70 150 - -
Adu09g02551 531 Gene3D - 379 454 - -
Adu09g02551 531 Gene3D - 227 302 - -
Adu09g02551 531 PANTHER UBIQUITIN 13 150 357 - -
Adu09g02551 531 PANTHER UBIQUITIN 13 226 433 - -
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 151 226 IPR000626 GO:0005515
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 70 150 IPR029071 -
Adu09g02551 531 CDD Ubl_ubiquitin 303 378 - -
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 75 150 IPR000626 GO:0005515
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 481 506 IPR019954 -
Adu09g02551 531 CDD Ubl_ubiquitin 379 454 - -
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 177 202 IPR019954 -
Adu09g02551 531 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Adu09g02551 531 Pfam Ubiquitin family 457 528 IPR000626 GO:0005515
Adu09g02551 531 Pfam Ubiquitin family 305 376 IPR000626 GO:0005515
Adu09g02551 531 Pfam Ubiquitin family 153 224 IPR000626 GO:0005515
Adu09g02551 531 Pfam Ubiquitin family 381 452 IPR000626 GO:0005515
Adu09g02551 531 Pfam Ubiquitin family 229 300 IPR000626 GO:0005515
Adu09g02551 531 ProSiteProfiles Ubiquitin domain profile. 455 530 IPR000626 GO:0005515
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 329 354 IPR019954 -
Adu09g02551 531 CDD Ubl_ubiquitin 75 150 - -
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 378 454 IPR029071 -
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 405 430 IPR019954 -
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 226 302 IPR029071 -
Adu09g02551 531 CDD Ubl_ubiquitin 227 302 - -
Adu09g02551 531 PRINTS Ubiquitin signature 85 105 IPR019956 -
Adu09g02551 531 PRINTS Ubiquitin signature 127 148 IPR019956 -
Adu09g02551 531 PRINTS Ubiquitin signature 106 126 IPR019956 -
Adu09g02551 531 PANTHER UBIQUITIN 13 454 530 - -
Adu09g02551 531 PANTHER UBIQUITIN 13 69 281 - -
Adu09g02551 531 PANTHER UBIQUITIN 13 281 509 - -
Adu09g02551 531 SUPERFAMILY Ubiquitin-like 454 530 IPR029071 -
Adu09g02551 531 PANTHER UBIQUITIN 454 530 - -
Adu09g02551 531 CDD Ubl_ubiquitin 455 530 - -
Adu09g02551 531 ProSitePatterns Ubiquitin domain signature. 253 278 IPR019954 -
Adu09g02551 531 PANTHER UBIQUITIN 150 357 - -
Adu09g02551 531 PANTHER UBIQUITIN 226 433 - -
Adu09g02551 531 PANTHER UBIQUITIN 69 281 - -
Adu09g02551 531 PANTHER UBIQUITIN 281 509 - -
Adu09g02551 531 SMART ubq_7 455 526 IPR000626 GO:0005515
Adu09g02551 531 SMART ubq_7 151 222 IPR000626 GO:0005515
Adu09g02551 531 SMART ubq_7 227 298 IPR000626 GO:0005515
Adu09g02551 531 SMART ubq_7 303 374 IPR000626 GO:0005515
Adu09g02551 531 SMART ubq_7 379 450 IPR000626 GO:0005515
Adu09g02551 531 SMART ubq_7 75 146 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02551 Adu-Chr9 112975846 112978212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02551 455 531 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.24e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02551 - K08770 tua:125520881 884.019