Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02546 ATGGCAACAGCACAACAAGAATCAGGATCAGGATCAGAATCAGCCGTTGCAGTTAACGGCGTTGAAGACTCCTACTTCTCAGCTCTCTTTGATGATGAAGGTAACCTCGTCCCCATCTCCGATGACAAGTACGCTCATGAATTGCAGTTACAAGAGACTATCATGTCCTCCTTCATCGCTTCTCAAAGCACCATCGAAGGCTCATCGTCATCAAAAACCGTTCGTTGCCTTCCATCTTCATCAACACCGTCGTCATCACGACCAGTCTTTGTTGTCCCCAAAACCGAGTACATAGAGCTTCTGGATGACGACGAAATGCTTATCGTATGTGAGATTTGTGCAGAAACCAAAGGGACTGATCAGATGTTCAGGAACAAGAAATGTGATCACTCCTTTTGCTCTGACTGTGTCACCAAGCATGTGGCCACAAAGATCCAAGAGAGCTTAACGATTGTTCCTTGCCCCGGATTGAACTGCAAGGGCGTGATGGAGCTTGATTCCTGCAGGCCCATGCTCCCAAAAGAGGTTCTTGATAGGTGGGACGATGCACTCTGTGAGGCCCTGTTTCTTGCGGTTCCGAAATTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGACGAGAATGAGGGCGGTGAAGGGATTATCAGGGAAGCTGAGTGCCCCTTTTGCCACAGGCTCTTCTGTGCCAGGTGTTGTGTTCCATGGCACCCTGGGGTTGAGTGTAACGTGTTGCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTTCTTCTTAGGGACCTTGCTGCTCAAAAGAAATGGAATAGGTGTCCCAGATGCAAGTTCTATGTGGAGAAGACTGAAGGGTGCTTGCATATTACATGCAGGTGCCGATTCGAGTTTTGCTATGCTTGTGGTGAACCTTGGAGTAGCACTCATGGTGGATGCCAAAGGATTAGATGA 951 0.4858 MATAQQESGSGSESAVAVNGVEDSYFSALFDDEGNLVPISDDKYAHELQLQETIMSSFIASQSTIEGSSSSKTVRCLPSSSTPSSSRPVFVVPKTEYIELLDDDEMLIVCEICAETKGTDQMFRNKKCDHSFCSDCVTKHVATKIQESLTIVPCPGLNCKGVMELDSCRPMLPKEVLDRWDDALCEALFLAVPKFYCPFRDCSAMLLDENEGGEGIIREAECPFCHRLFCARCCVPWHPGVECNVLQSLNEDERGREDLLLRDLAAQKKWNRCPRCKFYVEKTEGCLHITCRCRFEFCYACGEPWSSTHGGCQRIR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02546 316 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 33 303 - -
Adu09g02546 316 SMART ibrneu5 178 243 IPR002867 -
Adu09g02546 316 SMART ibrneu5 253 312 IPR002867 -
Adu09g02546 316 Pfam Zinc finger, C3HC4 type (RING finger) 110 155 IPR018957 GO:0046872
Adu09g02546 316 Gene3D - 241 316 - -
Adu09g02546 316 SUPERFAMILY RING/U-box 254 312 - -
Adu09g02546 316 SUPERFAMILY RING/U-box 182 247 - -
Adu09g02546 316 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 33 303 IPR031127 GO:0004842|GO:0016567
Adu09g02546 316 ProSiteProfiles TRIAD supradomain profile. 106 316 IPR044066 -
Adu09g02546 316 ProSiteProfiles Zinc finger RING-type profile. 110 155 IPR001841 -
Adu09g02546 316 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Adu09g02546 316 SUPERFAMILY RING/U-box 107 187 - -
Adu09g02546 316 Pfam IBR domain, a half RING-finger domain 262 312 IPR002867 -
Adu09g02546 316 Pfam IBR domain, a half RING-finger domain 195 243 IPR002867 -
Adu09g02546 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02546 Adu-Chr9 112946433 112947979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02546 110 304 C3H Transcription Factor Family AT2G19610 25.743 4.65e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02546 K11975 - pop:18094363 358.992