Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02533 ATGGATGATCTTCCTATTGTGAACAAGATTCTGTCGATGATCACTCAACAAGAGAGACAGCTCTTTAGTTTTGACATTGTCTTGGATGCCAAAATTCTTGCTACTGCTGTTACTTCATCATCTGGCAATACTGGAAATTCTTCTGCAGGGAAAGAAAAAGGAAATTTTTGGAAGAATCAATCAAACAAGGGACAAAATCGCAGCAAACTGCAATATAATGCTGAGGATGATAGTGATAATCTCAGTGATCACCAATTGACAAAAAGTGAAACCAACATTGCTGAATTCACACCTGAGCAAAGGAAAGCAATTCTAGCCTTACTCAGCAAACAAGATATGACTCATTCTCATAACATAAACCAATTTTCAATCAAAGCCAATCCTTCTCCTAATAAAGATGATTCAAATACTGAGAACACTTCAATTTCCACAAATTTGACTCCTTCCAATACTTCTAATGCCTCTGATCATTTTGATTACAGTTTTTTAGAAGGAACTAAAATTCATTTTTTAGACAATAATAATAATAATAGTTCCTCTCATGCACAAAATCAAAATGAGGATGCATTATATGATTCAAATGAAAGTGAAGACATTTTATCTTATCCAGAAATTCATGACCATTTGGAATCTGAACCTTCATCTTCAATTGAATCTACATCTGAATCTGCATCAAATTTAGAAACTGAAATTAGAGAAATTACTTCTACTGAGAATTTTGACTTTCATGAAACTGTTGATGTGCAGAAATCTTTCAGCGAGACAGGCAAGGATAGGGTTGGTGAAGTCCTTGCTTCGAATTCATCATCGCCGCGGAGCATGGATCCATTGGAAGGTGCACGAGTAGCTGAGGCAGTGGTGGAGCACAGGAGGGGACGAACCGATTCGAGTCTCGAACATGATGCCGTCCACCTCGTCGGGGTTGCACGGGGAAGCCGCAGCAATGAAGAATGTAGAAGCTGGTCTCCTACGCAAGCCATCATGGTTCTTCAGAATGACATCGATTTGCTTAACCCTCCAGCTGAGCTTGAGAAGAGAAAACACAAGCTCAAGCGTCTTGTTCAGTCTCCTAACTCTTTCTTCATGGATGTGAAGTGCCAAGGTTGCTTCAACATTACCACTGTATTCAGCCACTCTCAAACGGTCGTGGTGTGCGGAAACTGCCAGACAGTATTGTGCCAGCCAACCGGCGGTCGAGCCAGGCTGACTGAGGGCTGCTCTTTTAGAAAGAAAGGGGATTAA 1242 0.4066 MDDLPIVNKILSMITQQERQLFSFDIVLDAKILATAVTSSSGNTGNSSAGKEKGNFWKNQSNKGQNRSKLQYNAEDDSDNLSDHQLTKSETNIAEFTPEQRKAILALLSKQDMTHSHNINQFSIKANPSPNKDDSNTENTSISTNLTPSNTSNASDHFDYSFLEGTKIHFLDNNNNNSSSHAQNQNEDALYDSNESEDILSYPEIHDHLESEPSSSIESTSESASNLETEIREITSTENFDFHETVDVQKSFSETGKDRVGEVLASNSSSPRSMDPLEGARVAEAVVEHRRGRTDSSLEHDAVHLVGVARGSRSNEECRSWSPTQAIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02533 413 PANTHER 40S RIBOSOMAL PROTEIN S27 326 412 IPR000592 GO:0003735|GO:0005840|GO:0006412
Adu09g02533 413 SUPERFAMILY Zn-binding ribosomal proteins 357 411 IPR011332 GO:0006412
Adu09g02533 413 Pfam Ribosomal protein S27 357 411 IPR000592 GO:0003735|GO:0005840|GO:0006412
Adu09g02533 413 MobiDBLite consensus disorder prediction 174 190 - -
Adu09g02533 413 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 326 412 - -
Adu09g02533 413 MobiDBLite consensus disorder prediction 122 153 - -
Adu09g02533 413 Hamap 30S ribosomal protein S27e [rps27e]. 351 411 IPR000592 GO:0003735|GO:0005840|GO:0006412
Adu09g02533 413 ProSitePatterns Ribosomal protein S27e signature. 365 397 IPR000592 GO:0003735|GO:0005840|GO:0006412
Adu09g02533 413 Coils Coil 217 237 - -
Adu09g02533 413 MobiDBLite consensus disorder prediction 38 67 - -
Adu09g02533 413 MobiDBLite consensus disorder prediction 174 193 - -
Adu09g02533 413 Gene3D - 332 412 IPR023407 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02533 Adu-Chr9 112754290 112760392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02533 328 413 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.349 1.05e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02533 K02978 - cmos:111455834 177.563