Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02524 ATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCAGATCCAAAAGTACAAAGAGCAGCTGCTAGTGCACTGCGAACCCTGGCTTTCAAAAATGATGAAAATAAAAATCAGATCGTTGAATGCAATGCTCTTCCAAATCTAATTCTAATGCTTCGCTCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTTCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGCTCGTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGGCAGTTTGCAGCAACTGATTCAGATTGTAAGGTTCATATTGTACAGAGAGGTGCTGTCCAGCCATTGATAGAGATGCTTCAATCTCCAGATGTACAACTCCAAGAAATGTCTGCCTTTGCGTTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGCCTTGCACATAATGGTGGCTTGGTGCCATTGCTGAATCTTCTTGATTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGTCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGGTTGCAGGAAGGAGAGTTTATCGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCGTGGCCGTGTAAGCACATTGCACATTCACATGTTATGTCTCGAGTTGCTTATTGGGCTTCTTGGCTCATCTGGCTCTAAGCAGCAACTTGATGGTGCTGTTGCTTTATGCAAGTTGGCCAACAAAGCCTCAACTTTGTCTCCCATGGATGCTGCCCCCCTTTCTCCAACACCACAGGTATATTTAGGGGAGAAGTTTGTAAACAATGCCACGTTGTCAGATGTTACATTTTTGGTTGAAGGCAAACGGTTTTATGCTCACAGAATATGTCTACTAGCGTCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAAGGATATTGAGATTCCAAATATTAGATGGGAAATTTTTGAGCTGATGATGAGATTTATATATACTGGATCAACTGAAATCACTCTGGATATAGCTCAAGACCTTCTCCGAGCAGCTGATCAATATCTATTAGAAGGACTTAAGAGGCTCTGTGAATACACAATTGCAAAGGATATATCACTGGAGAACGTGTCAAGTATGTATGAACTTTCAGAAGCATTTAGTGCAGTATCATTGAGGCACTCGTGCATCCTTTTTATATTGGAGCAATTTGATAAATTGAGTGCAAGGCCTGGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATTCGTAATTACTTCATTAAAGTTCTTATGAAGACCAACTCCCGTAACATTCGACTCTGGGAAGGGGGGCCTCCCATCTGGTATAGTCGTATAGTGGTATACACAGCTTGGGTAGATGAGATAATCCCATTCCTGAGCTCTTCATTTTTTCTTCAGTTGTGTAAGCCCCTTCCTGCCTGTAACTTCACTGTCATAGATTTAGCAAATATTTAG 1599 0.4146 MEGGIPPLVHLLEFADPKVQRAAASALRTLAFKNDENKNQIVECNALPNLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLQEMSAFALGRLAQDTHNQAGLAHNGGLVPLLNLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIRGRVSTLHIHMLCLELLIGLLGSSGSKQQLDGAVALCKLANKASTLSPMDAAPLSPTPQVYLGEKFVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEIFELMMRFIYTGSTEITLDIAQDLLRAADQYLLEGLKRLCEYTIAKDISLENVSSMYELSEAFSAVSLRHSCILFILEQFDKLSARPGHSLLIQRIIPEIRNYFIKVLMKTNSRNIRLWEGGPPIWYSRIVVYTAWVDEIIPFLSSSFFLQLCKPLPACNFTVIDLANI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02524 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 87 IPR000225 GO:0005515
Adu09g02524 532 SUPERFAMILY ARM repeat 4 283 IPR016024 -
Adu09g02524 532 SMART BTB_4 314 411 IPR000210 GO:0005515
Adu09g02524 532 Pfam Armadillo/beta-catenin-like repeat 34 73 IPR000225 GO:0005515
Adu09g02524 532 Pfam Armadillo/beta-catenin-like repeat 2 31 IPR000225 GO:0005515
Adu09g02524 532 Pfam Armadillo/beta-catenin-like repeat 118 157 IPR000225 GO:0005515
Adu09g02524 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 170 212 IPR000225 GO:0005515
Adu09g02524 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 3 38 IPR000225 GO:0005515
Adu09g02524 532 CDD BTB_POZ_ARIA_plant 301 416 - -
Adu09g02524 532 Gene3D - 1 105 IPR011989 -
Adu09g02524 532 Gene3D Potassium Channel Kv1.1; Chain A 303 440 IPR011333 -
Adu09g02524 532 SMART arm_5 76 116 IPR000225 GO:0005515
Adu09g02524 532 SMART arm_5 34 74 IPR000225 GO:0005515
Adu09g02524 532 SMART arm_5 159 199 IPR000225 GO:0005515
Adu09g02524 532 SMART arm_5 118 158 IPR000225 GO:0005515
Adu09g02524 532 SMART arm_5 2 32 IPR000225 GO:0005515
Adu09g02524 532 Pfam BTB/POZ domain 308 408 IPR000210 GO:0005515
Adu09g02524 532 Gene3D - 106 293 IPR011989 -
Adu09g02524 532 ProSiteProfiles BTB domain profile. 314 381 IPR000210 GO:0005515
Adu09g02524 532 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 247 IPR044282 -
Adu09g02524 532 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 249 474 IPR044282 -
Adu09g02524 532 SUPERFAMILY POZ domain 306 409 IPR011333 -
Adu09g02524 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Adu09g02524 532 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 247 - -
Adu09g02524 532 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 249 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02524 Adu-Chr9 112680532 112686518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02524 5 211 U-box Gene Family AT3G46510 29.091 1.57e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Adu09g02524 BTB 3.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02524 - - aip:107616115 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02524 09 112680532 112686518 Adu09g02524 09 112680532 112686518 ECH
Adu05g01290 05 18749343 18756152 Adu09g02524 09 112680532 112686518 PCT