Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu09g02495 | ATGGAACCGGGCATGAGATCCGGTGGCCCTCCTGGGGTTTTTGTGAAGAACAGGAGTTCTTCAGGATGTTTGATTGTTAGGAAGAAAGGTGATGGGCTGAGTGGTGGGGTTGGCAGCTCTTCGAGCTCCAGGAAGATGTATGAATCGAAGAAAGTGAAGAAGAGGCCCAAAGTTGAGCTGAGTAGAGATTCGGGATCAAGTGGTGATCTACCGATGCCGCCTGCTAGAAGGCTTGGTCCTGAAACCATTCGAGTATGCAATGGTTTGAACGCATTCGAGCGAGGCGTGGCTGGTGGCAGTGAAATTGTCAGGAAGAGGGACAGGTTTGAGCAGATTAGGCGTAATGGGGATGATTTATCTGAGGAGGATGGGTTGGAGAGGATGGAAAGGAAGCGCAGTAAGATTGATGCGTTTGGTTCTGATCAATATGATGATGCTATGGACGTGGACATTATGAGAAGGAGGCATTTTGAAAATAATGGGGGTGGTTTAGGAGGAGGAAGGTTTGCTGGGGCAATGCATACTACTAGAACTGGCATTGATAGGGAGTTTGAATCTGGGTCAAGCAGACACACCATTGATAAGAGGAAAAACTCCTACCACAGCAGGGCAACTGGCTCATACCGAGGAGATAATGTTGACCATAATAGGTTCAAGATGAACAGGGATGCAGCTCAGCGCCCTCTGCCATTGCTGAGGGAAAAGTTTAACTGTGGAGAAACTATCAGGATTCAGGGGAAAAATGGGGTTTTGAAGGTGATGGTTAAGAAGGATAAGATGGGTGGGCCACTGGAACACTATGATAATCGCAAACCTGTAGAAAGCAGACAAAGTTTGAGGGCAGAGGGGATTGCCAAGAAGAATGTTCTGATACACCCTTCATCTTACTTGGAAGCAAAACCTATTGAGAAACAAGATTTAAATGTTAGGCCAGAGAAGAAACTGTTAGCAACAAGAAAATCATCGAGTAAGGACAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACACTTCATTGAATGTAGGCGTAAAAGGCAGTGAAGCTCCCAAGTCTTCAAAGAGAGTAGCATCTGAAGATGAACAGATTCCTAAGCATGAAAAACTCCAAACTACAGCAATTAAAGAAGGAAAAATAAGGCGTGGTAGTGGCACAGAAAAGCAGAAGCTTCGAGAAAAAATCCGGGAGATGCTTCTTAATTCAGGTTGGACCATAGACTATCGCCCTCGGAGGAATAGAGACTATCTTGATGCAGTTTACATCAATCCCGCTGGTACGGCCTATTGGTCTATCATCAAGGCCTATGAGGCACTTCAGAAGCAATTGAATGATGACGACCCTGGGGCCAAGCTCAAAGGGGAGAGCTCTTCTTTTGCTCCTATTGCAGATGATGTGCTTAGTCAGTTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGAGTTAAAGAAGAAGAAGAAGGAAAGAGATAATATTGAGAGTGACAGTGAAAAAGAGCGTCAATTTAAAATATCTTCCAGCATCAAGCATGACATGAATGGCACGAATAGTGAAATCAATCCAGAGAAACTAAGCTCCTTTTTAAAGCAAGGAAGTAAGTCAATGAAAACTAAAATGATTGAAAATGCTGTCAACAGTGGTAGCTCTAAAAGCCAGAACGTTGTCTCTCAACCGAATGATGGGACTGAGAAATCATTTCCAGGAAACAATCCCCATGTCTTACATGGGAGGAAAAGTAGAAAAGACGGAAGATGCACTTTGTTAATTCGTAATTCTAACATAGGTTCAGGTTCAGAATCTGATGACTTTGTTCCATATACTGGGAAAAGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGCTGTACAGTTAAGCCAAAAGGTTCAGTATCGTAGAAAGAAGCGAGTGATGCTGGAGGGATGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGTAAATTGCGCCAGCCATATCAAAACATTTATTTAGACTCTGGAGATTCTCTTCTACAGTGCCAGATTGATGCATGGAGTAGACAAGAGAAGTCTGAGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATAGTTGTCCATCAACATTTCATCTGAGTTGCTTAGACATTCAGATGCTTCCCCCTGGTGAATGGCATTGTCCAAATTGCACCTGCAAATTTTGTGGAGTTGTCAGTGGACCTGTGAACAAAGATGAATTAACTATAAATGCGCTGCATATTTGCAACTTATGCGAGAAAAAATTTCATGAACGTTGTACAAAGGAGATGGACACCCTTCCTACTAACTCTGATTTCTCAGGGCCTTCCTTTTGCGGAAAGGGCTGCAAAGAGCTCTTTGAGCATTTGAAAAAATACCTTGGTACCAAGCATGAATTAGATGCAGGCCTCACTTGGTCTCTCATTCGTAGAACAGATGAAGACTCAGATGCAGCTAATAGGGGGATTAGCCAGAGGGTGGAATGCAATTCCAAGCTAGCTGTTGCACTCGCTGTGATGGATGAATGCTTTTTACCAGTTGTTGATAGGAGGAGTGGGATCAATATACTACATAATGTTTTATATAATACTGGGTCAAACTTCAGTCGGTTGAATTATACTGGTTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATGATTTCCGCCGCATCAATCAGGTTCCGTGGGACCAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATGTATAGGAATCAGGGGATGTGCCGCCGGCTCTTTTGTGCAATTGAATTGGTTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCAGCGATTTCTGAACTCATTCATACATGGACAACAGTTTTCGGCTTCACGCATCTTGAGAAATCACTCAGACAAGAAATGAGGTCATTGAGTATGTTGGTCTTCCCTGGTATAGATATGTTGCAGAAGCTGCTAGTGGAGCAAGGAAAACTTGAGGGTTTTGAGAGAATTAAAAATAGAGATGAGGTTAATACTAATCCCAGTATGGCTAGTAGGTTGGACATGAATTCCTCAGCCCTGCAAACTCCTCATGGAAACGATGATGCTAGTTCAAATCCTGACAATGACATAAGCAATGAATCTAGTGATGCTTCTCAAGAACAAAGCAACAAAATCTTGGTTGACAGGAATGTGTGGTCAAAATCTCATTCTGAGGATAGGTTATCTGATTCTGCTTCAGATAAATGCGTTTCATCTTCTAGTACCAGTGATGATGTGCTAGAATCGAACAATAAAATAGTGACAGCCTCTCCTGGTAATGATAAATTGCATCCTTCTGCGAAGTTTCAAAAGGACAATTGTATGAGTACTCCTCCAATAGATGCTTCAAATTGCCATGGAAATCCAGCTTTGGGTTCCGAGAATGCTTTTTCTGACCCTGATTCTGCAGAAAATATGGTTGAACCTGTTTCTAATAGGAAATGTCACTCATACACTGATATGAATTGTGATCCCTCGGAGCATGGTATCAATCCAGCATTGGATTTGCGTGTGGGGGGTAATGCTTTGTCTTTTAGAGAGTTTGATATGAATGATGCCCATGATGAGGCTTTTGAAGCTGATCCATCAGTGAATTTGCTTGAGGAGAATAATAAACACGTGGATATCTCTTGTTCTATTCTTAATCAAGGTGGTGAGAGTTCTTTGCGAGTAAGATATGATTTGAATGATGAAAATGCTCGTGAGGATGAACAAAATTACGACAAAGGATTTACTTCACGGGAAATGCATATGAATGATACTGAGCTAAGTGCATCTGGTGATAGTTCTGAGACTGATCCAGCATAA | 3921 | 0.4229 | MEPGMRSGGPPGVFVKNRSSSGCLIVRKKGDGLSGGVGSSSSSRKMYESKKVKKRPKVELSRDSGSSGDLPMPPARRLGPETIRVCNGLNAFERGVAGGSEIVRKRDRFEQIRRNGDDLSEEDGLERMERKRSKIDAFGSDQYDDAMDVDIMRRRHFENNGGGLGGGRFAGAMHTTRTGIDREFESGSSRHTIDKRKNSYHSRATGSYRGDNVDHNRFKMNRDAAQRPLPLLREKFNCGETIRIQGKNGVLKVMVKKDKMGGPLEHYDNRKPVESRQSLRAEGIAKKNVLIHPSSYLEAKPIEKQDLNVRPEKKLLATRKSSSKDSKGDEQDSDNSDTSLNVGVKGSEAPKSSKRVASEDEQIPKHEKLQTTAIKEGKIRRGSGTEKQKLREKIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNDDDPGAKLKGESSSFAPIADDVLSQLTRKTRKKMEKELKKKKKERDNIESDSEKERQFKISSSIKHDMNGTNSEINPEKLSSFLKQGSKSMKTKMIENAVNSGSSKSQNVVSQPNDGTEKSFPGNNPHVLHGRKSRKDGRCTLLIRNSNIGSGSESDDFVPYTGKRTVLSWLVDSGAVQLSQKVQYRRKKRVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLRQPYQNIYLDSGDSLLQCQIDAWSRQEKSEKISFHSVDIDGNDPNDDTCGICGDGGDLICCDSCPSTFHLSCLDIQMLPPGEWHCPNCTCKFCGVVSGPVNKDELTINALHICNLCEKKFHERCTKEMDTLPTNSDFSGPSFCGKGCKELFEHLKKYLGTKHELDAGLTWSLIRRTDEDSDAANRGISQRVECNSKLAVALAVMDECFLPVVDRRSGINILHNVLYNTGSNFSRLNYTGFYTAILERGDEMISAASIRFRGTKLAEMPFIGTRHMYRNQGMCRRLFCAIELVLCSLKVEKLVIPAISELIHTWTTVFGFTHLEKSLRQEMRSLSMLVFPGIDMLQKLLVEQGKLEGFERIKNRDEVNTNPSMASRLDMNSSALQTPHGNDDASSNPDNDISNESSDASQEQSNKILVDRNVWSKSHSEDRLSDSASDKCVSSSSTSDDVLESNNKIVTASPGNDKLHPSAKFQKDNCMSTPPIDASNCHGNPALGSENAFSDPDSAENMVEPVSNRKCHSYTDMNCDPSEHGINPALDLRVGGNALSFREFDMNDAHDEAFEADPSVNLLEENNKHVDISCSILNQGGESSLRVRYDLNDENAREDEQNYDKGFTSREMHMNDTELSASGDSSETDPA | 1306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu09g02495 | 1306 | Pfam | PHD-finger | 717 | 759 | IPR019787 | - | |
| Adu09g02495 | 1306 | Coils | Coil | 467 | 494 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1048 | 1088 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 352 | 374 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1141 | 1162 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 473 | 519 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1288 | 1306 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1268 | 1306 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 308 | 374 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1089 | 1103 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1268 | 1287 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1048 | 1177 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 308 | 334 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 542 | 565 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 542 | 580 | - | - | |
| Adu09g02495 | 1306 | SMART | PHD_3 | 758 | 816 | IPR001965 | - | |
| Adu09g02495 | 1306 | SMART | PHD_3 | 716 | 757 | IPR001965 | - | |
| Adu09g02495 | 1306 | PANTHER | PHD FINGER FAMILY PROTEIN | 1 | 1197 | - | - | |
| Adu09g02495 | 1306 | SUPERFAMILY | FYVE/PHD zinc finger | 698 | 758 | IPR011011 | - | |
| Adu09g02495 | 1306 | ProSiteProfiles | Zinc finger PHD-type profile. | 714 | 759 | IPR019787 | - | |
| Adu09g02495 | 1306 | CDD | PHD2_CHD_II | 717 | 756 | - | - | |
| Adu09g02495 | 1306 | Pfam | Tify domain binding domain | 639 | 689 | IPR032308 | - | |
| Adu09g02495 | 1306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 705 | 806 | IPR013083 | - | |
| Adu09g02495 | 1306 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN | 1 | 1197 | - | - | |
| Adu09g02495 | 1306 | ProSitePatterns | Zinc finger PHD-type signature. | 717 | 756 | IPR019786 | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 1104 | 1128 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 25 | 78 | - | - | |
| Adu09g02495 | 1306 | MobiDBLite | consensus disorder prediction | 482 | 505 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu09g02495 | Adu-Chr9 | 112392490 | 112399710 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu09g02495 | 4 | 1075 | PHD Transcription Factor Family | AT4G14920 | 46.795 | 0.0 | 870 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Adu09g02495 | TDBD | 1.7e-22 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu09g02495 | - | - | mtr:MTR_1g103830 | 1591.63 |