Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02438 ATGGGGACCCCCAACGGGGATGTGAGGAAGAAGGAGGAGGAGGAGGAGGCTAAGTTGATGGAACAGGAATACCAAGACAAGAAAGAGGAGGAGGAGGAAGAGGAGGAGGATCCCAATGCAGTTTGGAGGTTTAGGATATCGGAGCCGTTGAAGGAGACGCTGAAGGGGAAGGGAATAGAGTCACTGTTTCCGATTCAGGCCATCACCTTTGATACCATTCTTGATGGCTCCGATTTGGTTGGCCGTGCTCGAACCGGTCAGGGAAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTGATAAACGGTATAGCCAAAGCTTCAAGAAAGACTGGTTATAGAAGGCCTCCAAGCGTTCTGGTTCTTTTACCAACAAGGGAATTGGCATCTCAGGTTCACTCTGACTTTGAACTTTATGGTGGCGCCGTCGGATTAACATCTTGCTGTTTATATGGTGGAGCTCCATATCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCAGGCCGGATTAAGGATCATATAGAGAGGGAAAATATTGATCTAAGCCAGCTTAGATTTCGCGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTTGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTTGGAAATACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCCTGCACTACTTCTGCCAGGTCCCGCCTTATTCCGGACATCATTCGCTGTTATAGCAGCGGAGGACGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCAAGAGCTCTCCATGGAGACATACAGCAGGCGCAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCTACAAATGTGGCAGCTCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCGCCAAGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGACGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTATATCCAAAATCGAAAGAGAATCCGGTGTCAAATTTGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCTATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCGGCGTTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGACTTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATGAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTGCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGGCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACCGCCGAAGGAAGTGGCGTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGACAAGGCCTCAAGTGTGAGGTTAGAGGTGTTGACAGCGTTGCCACGTTTGCAAGAAAAAGACCAATCAAGGGGTGGAAGATTTGGTAGTGGTGGCCCTCGTCGTGGTGGTTTCGGAGATAGAAGTGTGGGGAGCAGGTTTTTGGGTGGAAGAGGTGGCAGCGGCAGGAATGTTAGATTTTCCAGTGACAGATTCTCTAATAATGGTGGCATTGGGAGAGGTCGTGGCATCAGGAGTGGAAAGAGATGGTGA 1902 0.46 MGTPNGDVRKKEEEEEAKLMEQEYQDKKEEEEEEEEDPNAVWRFRISEPLKETLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGIAKASRKTGYRRPPSVLVLLPTRELASQVHSDFELYGGAVGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLRFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVDLLAKALAKAVGYTEMKKRSLLTSMENHVTLLLEIGKPIFTATFAYGVLRRFLAEEKVEAVKGLTLTAEGSGVVFDVPAEDLDTYLAGKDKASSVRLEVLTALPRLQEKDQSRGGRFGSGGPRRGGFGDRSVGSRFLGGRGGSGRNVRFSSDRFSNNGGIGRGRGIRSGKRW 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02438 633 Pfam Helicase conserved C-terminal domain 287 384 IPR001650 -
Adu09g02438 633 MobiDBLite consensus disorder prediction 1 25 - -
Adu09g02438 633 SMART ultradead3 58 270 IPR014001 -
Adu09g02438 633 Gene3D - 5 253 IPR027417 -
Adu09g02438 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 252 IPR014001 -
Adu09g02438 633 Pfam GUCT (NUC152) domain 473 568 IPR012562 GO:0003723|GO:0004386|GO:0005524
Adu09g02438 633 MobiDBLite consensus disorder prediction 571 633 - -
Adu09g02438 633 Gene3D - 266 491 IPR027417 -
Adu09g02438 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 396 IPR027417 -
Adu09g02438 633 CDD GUCT_RH7_like 480 565 - -
Adu09g02438 633 Pfam DEAD/DEAH box helicase 63 240 IPR011545 GO:0003676|GO:0005524
Adu09g02438 633 SUPERFAMILY RNA-binding domain, RBD 477 560 IPR035979 GO:0003676
Adu09g02438 633 SMART helicmild6 307 384 IPR001650 -
Adu09g02438 633 Gene3D - 492 563 - -
Adu09g02438 633 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 605 - -
Adu09g02438 633 CDD SF2_C_DEAD 267 393 - -
Adu09g02438 633 Coils Coil 10 37 - -
Adu09g02438 633 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Adu09g02438 633 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 5 605 - -
Adu09g02438 633 MobiDBLite consensus disorder prediction 1 39 - -
Adu09g02438 633 CDD DEADc 50 247 - -
Adu09g02438 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 423 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02438 Adu-Chr9 111849313 111852155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02438 76 426 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 1.06e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02438 K16911 - gmx:100820207 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02438 09 111849313 111852155 Adu09g02438 09 111849313 111852155 ECH