Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02400 ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTTAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGTTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCCAAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCAAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCACGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAAACACGGGGCTTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCACCCCCTGCAGAAGAATGA 1116 0.491 MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPVYGRRSASPYGRQRDGPDPSRGSSQSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSQSPYDTQKASPVNGHETRDSPDGKGNPSPYNGYKGSPNTGLEPRDSPNYSGPESPMHEAYHSQSPPAEE 371
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02400 371 SMART rrm1_1 95 161 IPR000504 GO:0003723
Adu09g02400 371 SMART rrm1_1 3 70 IPR000504 GO:0003723
Adu09g02400 371 MobiDBLite consensus disorder prediction 268 286 - -
Adu09g02400 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Adu09g02400 371 SUPERFAMILY RNA-binding domain, RBD 76 172 IPR035979 GO:0003676
Adu09g02400 371 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 320 - -
Adu09g02400 371 MobiDBLite consensus disorder prediction 287 316 - -
Adu09g02400 371 Gene3D - 86 197 IPR012677 -
Adu09g02400 371 MobiDBLite consensus disorder prediction 167 235 - -
Adu09g02400 371 CDD RRM1_AtRSp31_like 2 73 - -
Adu09g02400 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Adu09g02400 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Adu09g02400 371 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Adu09g02400 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 165 IPR000504 GO:0003723
Adu09g02400 371 MobiDBLite consensus disorder prediction 167 371 - -
Adu09g02400 371 PANTHER BNAC08G47240D PROTEIN 4 320 - -
Adu09g02400 371 MobiDBLite consensus disorder prediction 333 347 - -
Adu09g02400 371 CDD RRM2_AtRSp31_like 95 164 - -
Adu09g02400 371 Gene3D - 1 85 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Adu09g02400 Adu-Chr9 111289500 111292420 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02400 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 24.044 3.88e-09 56.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02400 K12893 - gmx:100796509 585.104