Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu09g02400 | ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTTAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGTTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCCAAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCAAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCACGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAAACACGGGGCTTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCACCCCCTGCAGAAGAATGA | 1116 | 0.491 | MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPVYGRRSASPYGRQRDGPDPSRGSSQSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSQSPYDTQKASPVNGHETRDSPDGKGNPSPYNGYKGSPNTGLEPRDSPNYSGPESPMHEAYHSQSPPAEE | 371 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu09g02400 | 371 | SMART | rrm1_1 | 95 | 161 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | MobiDBLite | consensus disorder prediction | 268 | 286 | - | - | |
Adu09g02400 | 371 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | SUPERFAMILY | RNA-binding domain, RBD | 76 | 172 | IPR035979 | GO:0003676 | |
Adu09g02400 | 371 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 4 | 320 | - | - | |
Adu09g02400 | 371 | MobiDBLite | consensus disorder prediction | 287 | 316 | - | - | |
Adu09g02400 | 371 | Gene3D | - | 86 | 197 | IPR012677 | - | |
Adu09g02400 | 371 | MobiDBLite | consensus disorder prediction | 167 | 235 | - | - | |
Adu09g02400 | 371 | CDD | RRM1_AtRSp31_like | 2 | 73 | - | - | |
Adu09g02400 | 371 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 62 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 158 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 91 | IPR035979 | GO:0003676 | |
Adu09g02400 | 371 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 165 | IPR000504 | GO:0003723 | |
Adu09g02400 | 371 | MobiDBLite | consensus disorder prediction | 167 | 371 | - | - | |
Adu09g02400 | 371 | PANTHER | BNAC08G47240D PROTEIN | 4 | 320 | - | - | |
Adu09g02400 | 371 | MobiDBLite | consensus disorder prediction | 333 | 347 | - | - | |
Adu09g02400 | 371 | CDD | RRM2_AtRSp31_like | 95 | 164 | - | - | |
Adu09g02400 | 371 | Gene3D | - | 1 | 85 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu09g02400 | Adu-Chr9 | 111289500 | 111292420 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu09g02400 | 4 | 168 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 24.044 | 3.88e-09 | 56.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu09g02400 | K12893 | - | gmx:100796509 | 585.104 |