LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02400	ATGAGGCCTATCTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAAGCGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATTTATATGGAAGATGACAGAGATGCTGAGGCTGCAATTCGTGCCCTCGATCGTATTGAATTTGGTCGGAAGGGGCGCAGGCTTCGTGTTGAATGGACAAAGCATGAGCGTGGCGTTAGAAGACCTGCTAGTTCAAGAAGATCAGCTAATGGGAGGCCATCAAAGACCTTATTTGTTATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGCGGCACTTTGAGCCATATGGTAAGATAACCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTATTGGATCGGGTTATTTCAGTTGAGTTTGCTGTTAAAGATGATGATGACAGGCGAGGTGGACATAGTCCTGGGAGAGGTCATGATCGTCAGCGTGACAGGAGCCGTGATGGAAGGCGGTCACCCAGTCCATATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCGTGGGCCTAGTCCATATAAGAGGGAAAGGGGCAGTCCTGACTATGGCCGAGGCCGCAGCCGTAGTCGTAGCCATAGTCCCCTTCGAAGAGAGCAGCAAGTTAGTCCTGTTTATGGGCGTAGAAGCGCTAGTCCATATGGAAGACAGAGGGATGGCCCTGATCCTTCCCGTGGGTCTAGCCAAAGCCCTTACCACAAAGAGCGTGGGAGAGCTGACCATGGAATCTCTCCTTCCCATAGTCCTGATGGAAGGGAGACAAGCCCCCAAAATGGCCGTGGTCCTAGTCAAAGTCCTTATGATACTCAGAAGGCTAGCCCTGTAAATGGCCACGAGACCAGGGATAGTCCCGATGGAAAAGGGAACCCTAGCCCTTACAATGGTTATAAAGGAAGCCCAAACACGGGGCTTGAACCAAGGGATAGCCCCAACTATAGTGGTCCTGAAAGTCCCATGCATGAAGCATATCACAGTCAGTCACCCCCTGCAGAAGAATGA	1116	0.491	MRPIFCGNFEYDARQSELERLFKRYGKVDRVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRRLRVEWTKHERGVRRPASSRRSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKITSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRGGHSPGRGHDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERGSPDYGRGRSRSRSHSPLRREQQVSPVYGRRSASPYGRQRDGPDPSRGSSQSPYHKERGRADHGISPSHSPDGRETSPQNGRGPSQSPYDTQKASPVNGHETRDSPDGKGNPSPYNGYKGSPNTGLEPRDSPNYSGPESPMHEAYHSQSPPAEE	371

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g02400	371	SMART	rrm1_1	95	161	IPR000504	GO:0003723
	Adu09g02400	371	SMART	rrm1_1	3	70	IPR000504	GO:0003723
	Adu09g02400	371	MobiDBLite	consensus disorder prediction	268	286	-	-
	Adu09g02400	371	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	74	IPR000504	GO:0003723
	Adu09g02400	371	SUPERFAMILY	RNA-binding domain, RBD	76	172	IPR035979	GO:0003676
	Adu09g02400	371	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	4	320	-	-
	Adu09g02400	371	MobiDBLite	consensus disorder prediction	287	316	-	-
	Adu09g02400	371	Gene3D	-	86	197	IPR012677	-
	Adu09g02400	371	MobiDBLite	consensus disorder prediction	167	235	-	-
	Adu09g02400	371	CDD	RRM1_AtRSp31_like	2	73	-	-
	Adu09g02400	371	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	62	IPR000504	GO:0003723
	Adu09g02400	371	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	96	158	IPR000504	GO:0003723
	Adu09g02400	371	SUPERFAMILY	RNA-binding domain, RBD	4	91	IPR035979	GO:0003676
	Adu09g02400	371	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	94	165	IPR000504	GO:0003723
	Adu09g02400	371	MobiDBLite	consensus disorder prediction	167	371	-	-
	Adu09g02400	371	PANTHER	BNAC08G47240D PROTEIN	4	320	-	-
	Adu09g02400	371	MobiDBLite	consensus disorder prediction	333	347	-	-
	Adu09g02400	371	CDD	RRM2_AtRSp31_like	95	164	-	-
	Adu09g02400	371	Gene3D	-	1	85	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02400	Adu-Chr9	111289500	111292420	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g02400	4	168	Eukaryotic Initiation Factors Gene Family	AT1G49760	24.044	3.88e-09	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02400	K12893		-	gmx:100796509	585.104