Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02381 ATGCCAAATAAGTTAAGCAACAGCTTGAATGACATTAATAAAAGAACAAAGAAGGAATCATGCATTGAGAAATTGGAGAAACACATTGTTCAGAATCCTTCGGACAGGGTTGGCAACTCAATGGCTCAATTTGAAGACCTCCCAGACGAAGATCCGGAAGAGGAGGAATTGTGTGAGGAGCTAGAGGAAGATCCAGAGGAGGAATCGGCTGAGGAAGTAGAGGATGATCCACACAAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATTAGAGGAATCAGCTGAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGCTGAGGAACTGGAGGAAGATCAAGAGGAAGAATCAGCTGAGGAACTGGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCAGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCAAGGAACTGGAGGAAGATCCTGAGGAGGAATCAGTTGAAGAAGTAGAGGAAGATGTACAGGAGGAATCAGCCGAGGAACTGGAGGAAGATCCCGAGGAGGAATCAGCTGAGGAACTGGAAAAAGATCCAGAGGAGGAATCAACTGAGGAACTAGAGGAAGATCCTGAAGAGGATCTAGTAGTAAACATCAAGTGGGAGGGTGCATCATGTAATGAAGTTCCATTATTATCCCAGGCATCGTATCAATCACCGAAGAAATGCAAGCAGGAGGGAATGCAAAGCCAAAATTTAGAACCAGAAGCTTCTCGACTGGAACTCAGTAGTGACAAGTCAATTTCTGTGGCAACTACCGATAAAGTTGGTTCCAAAGAAGAAGTTTCAGGAAGGTCGGCAAAACAAAGGCGTAGTAGATGGGAACCACAACCTCGTGGAGATGGAACGAATGATGATCTGACTTGCAAAAGGAGGAAAACCAGGTGGTCTAGTGAAGAAACTCAAATGAAAATGCTGGGTCCACTTCAGCTTCCTAACTTAAATATCATATCTAAGTTGATGACATTAAACCCAGATTTTAACCCTCCTCCTGAATACAAGCCCCCAAAGCTCTTCAAAAAGCTTTACATACCAGTGAAAGAATATCCAGAGTACAATTTCATTGGACTTATTATTGGTCCTCGTGGAAACACACAGAAGAAGATGGAAAAAGAATCTGGGGCTACAATTCTTCTAAGAGGTAAAGGCTCCTCAAAAGCAACTAGCAAATGTGACTCTGAGGAAGAAGATTTACATGTTTTAATAGAAGCTGACAACCAAAAATCACTGGATGCAGCAGTTGGCATGGTTGAAAAACTGCTAATTCCAGTTGAAGAAGGACAAAATGAGCACAAGCGAGAACAGTTAAAGGAGCTGGCTCAACTGAAAGCAACACGGAGAGATGAAAATGTGTGCAGTGTGTGTGGTGATAAGGGACACAGACATTATGCATGCCCTAACCTTAGTTCAACTTTTAATTTCGATTTATTTGACACTGGTTGTAGCAGCAGCATTTCAATCCCAACTTATCCTGCTACTGCATTGTTTCCACCAAACAGTAACTTTCCATGCGGATCTGGAACTAGTCTTAATTCAGTGCAGAATAGACAAATAAGGCCTGGAAAGGAAATAAACGACAAAAACCTTTATGTTGGTTATTTGCCGCCATCAATTGACAATAATAGATTGACTGAGCTGTTCTCCCCATTTGGTAAGATCACTGAAGCTGATGTTATTAAGGATCGAACCACTGGCATCAGTAAAGGTTATGGCTTTGTCAAATTTGAAGATTCCCAGGATGCAGCTTTAGCTATAACGCATCTAAATGGTTTCAGAATTGATGGAAAGTTTTTGAAAGTGAGGATAGCCGGACTGCAGGCAAATAATGAAACCCCAAGTCTAAACCCTATTCCTCAGATACCATTGCCTGCAACTGTCTCCACAAATGTCATTCACCAAACGAATCTTTCTGATCCATTACATTTCATGCTGCCAGAATACCAATCTTCATTTCATGACAGCAGTAGCACAAATATGTTTTCATGTAATATCAACTCAGAGGATGGTGATCCTCTGAAGGTAAATGCTTTGCCCTTTACTCCTCCAAGAAACACTTTGATCACTCCCCATCCAGGTTATTCTGGCAACTTTTCAGATCAAAGTTTGTTCTCATCAAAAGATTCAACCGAACATTTTCCTGGTGATCCAGGCAATCTTGGTAATTTCAGTCCTTTCTTATGA 2244 0.422 MPNKLSNSLNDINKRTKKESCIEKLEKHIVQNPSDRVGNSMAQFEDLPDEDPEEEELCEELEEDPEEESAEEVEDDPHKESAEELEEDPEEELEESAEELEEDPEEESAEELEEDQEEESAEELEEDVQEESAKELEEDPEEESVEEVEEDVQEESAKELEEDPEEESVEEVEEDVQEESAEELEEDPEEESAEELEKDPEEESTEELEEDPEEDLVVNIKWEGASCNEVPLLSQASYQSPKKCKQEGMQSQNLEPEASRLELSSDKSISVATTDKVGSKEEVSGRSAKQRRSRWEPQPRGDGTNDDLTCKRRKTRWSSEETQMKMLGPLQLPNLNIISKLMTLNPDFNPPPEYKPPKLFKKLYIPVKEYPEYNFIGLIIGPRGNTQKKMEKESGATILLRGKGSSKATSKCDSEEEDLHVLIEADNQKSLDAAVGMVEKLLIPVEEGQNEHKREQLKELAQLKATRRDENVCSVCGDKGHRHYACPNLSSTFNFDLFDTGCSSSISIPTYPATALFPPNSNFPCGSGTSLNSVQNRQIRPGKEINDKNLYVGYLPPSIDNNRLTELFSPFGKITEADVIKDRTTGISKGYGFVKFEDSQDAALAITHLNGFRIDGKFLKVRIAGLQANNETPSLNPIPQIPLPATVSTNVIHQTNLSDPLHFMLPEYQSSFHDSSSTNMFSCNINSEDGDPLKVNALPFTPPRNTLITPHPGYSGNFSDQSLFSSKDSTEHFPGDPGNLGNFSPFL 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02381 747 SMART rrm1_1 549 622 IPR000504 GO:0003723
Adu09g02381 747 MobiDBLite consensus disorder prediction 725 747 - -
Adu09g02381 747 MobiDBLite consensus disorder prediction 238 277 - -
Adu09g02381 747 SUPERFAMILY RNA-binding domain, RBD 538 624 IPR035979 GO:0003676
Adu09g02381 747 MobiDBLite consensus disorder prediction 46 216 - -
Adu09g02381 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 550 620 IPR000504 GO:0003723
Adu09g02381 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 548 626 IPR000504 GO:0003723
Adu09g02381 747 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 359 476 IPR036612 GO:0003723
Adu09g02381 747 MobiDBLite consensus disorder prediction 11 31 - -
Adu09g02381 747 MobiDBLite consensus disorder prediction 1 220 - -
Adu09g02381 747 Gene3D K Homology domain, type 1 279 476 IPR036612 GO:0003723
Adu09g02381 747 ProSiteProfiles Type-1 KH domain profile. 374 438 - -
Adu09g02381 747 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 336 677 - -
Adu09g02381 747 PANTHER SPLICING FACTOR-LIKE PROTEIN 1 210 334 - -
Adu09g02381 747 SMART kh_6 359 443 IPR004087 GO:0003676
Adu09g02381 747 CDD SF1_like-KH 361 468 - -
Adu09g02381 747 Coils Coil 90 134 - -
Adu09g02381 747 Pfam KH domain 374 439 IPR004088 GO:0003723
Adu09g02381 747 Gene3D - 527 632 IPR012677 -
Adu09g02381 747 MobiDBLite consensus disorder prediction 238 319 - -
Adu09g02381 747 PANTHER RNA-BINDING PROTEIN RELATED 336 677 IPR045071 -
Adu09g02381 747 PANTHER RNA-BINDING PROTEIN RELATED 210 334 IPR045071 -
Adu09g02381 747 MobiDBLite consensus disorder prediction 279 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02381 Adu-Chr9 111106548 111108882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02381 460 624 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 1.89e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02381 K13095 - csin:114293476 391.349