Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02378 ATGGGGTTGCAGCCACTGGAAAAAGCAAAACCAAAATACAAGAAGGGTTTATGGTCACCAGAAGAGGACAATAAGCTCAAAAACCACATTGTAAAGCATGGTCATGGCTGCTGGAGTTCTGTTCCTATTAAGGCAGGTTTACAAAGGAATGGAAAAAGTTGCAGACTGAGGTGGATTAACTATCTAAGGCCAGGATTGAAGAGGGGCTTGTTCAGCAAACAAGAGGAGGAGACAATCCTCACCCTTCACCAGATTCTAGGCAACAAGTGGTCTCAGATAGCACAAAATTTGCCGGGAAGAACTGACAATGAGATAAAGAACTATTGGCATTCATATTTGAAAAAGAGAGTGATGTCCAATGCTAAGGAAATGGAATCTCATGAACAAGTTCAGTATGCTACCTCAAGCTCAGAAACCATGGATTCTTCTTCACATGCTGTCCAGAATCTTGCAACACAAGGCACACAAAATACCTACAGCTTCACCAATGAGGCTTGTCAAAGCTCCCCCATACCAAAACTTCTATTTGCTGAGTGGCTTACACTTGATCATGTGCAATGTGGTGGCAACTCTGCTAATTCATATGATGAATCTTTGGCTTTGAAGGATGGATTTGACAGTCAAATTTCGTCTTTTCAAGAATCTGCTACAGTACATGATGCTATGTCACAAGGACCCTTTGGAGGAGATTATCGTAATAATAGTCTAGCTCGTCTAGCTCATAGTTCAGCCGAAGAGATGTTCAATTCACAGCTAAAGTTTGGAACAACAATGGTAGAAAATGGATTCATCCAATGTATACCTGGGGTTGATTTTAGTGCCAATTTCAACATGAGCAATGATACGATGTATATCTATGATAATAGCATTATTTCCACGGCAGCTCAAAATGGAATGTAA 900 0.4067 MGLQPLEKAKPKYKKGLWSPEEDNKLKNHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGLFSKQEEETILTLHQILGNKWSQIAQNLPGRTDNEIKNYWHSYLKKRVMSNAKEMESHEQVQYATSSSETMDSSSHAVQNLATQGTQNTYSFTNEACQSSPIPKLLFAEWLTLDHVQCGGNSANSYDESLALKDGFDSQISSFQESATVHDAMSQGPFGGDYRNNSLARLAHSSAEEMFNSQLKFGTTMVENGFIQCIPGVDFSANFNMSNDTMYIYDNSIISTAAQNGM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02378 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Adu09g02378 299 CDD SANT 71 113 IPR001005 -
Adu09g02378 299 CDD SANT 18 62 IPR001005 -
Adu09g02378 299 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Adu09g02378 299 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Adu09g02378 299 PANTHER MYB TRANSCRIPTION FACTOR 157 278 - -
Adu09g02378 299 PANTHER MYB TRANSCRIPTION FACTOR 1 155 - -
Adu09g02378 299 Gene3D - 15 67 - -
Adu09g02378 299 SMART sant 67 115 IPR001005 -
Adu09g02378 299 SMART sant 14 64 IPR001005 -
Adu09g02378 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Adu09g02378 299 PANTHER MYB DOMAIN PROTEIN 55 1 155 - -
Adu09g02378 299 PANTHER MYB DOMAIN PROTEIN 55 157 278 - -
Adu09g02378 299 Gene3D - 70 142 - -
Adu09g02378 299 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu09g02378 299 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Adu09g02378 299 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02378 Adu-Chr9 111084727 111086411 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02378 8 261 MYB Transcription Factor Family AT3G48920 44.961 1.16e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu09g02378 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02378 K09422 - gmx:778167 392.889