LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02353	ATGGGTAGCATCCAAGTAGCTGAAGCTGAAGAACAAGACACACACACAGTCTTTGTTGCGGTGGGAAACAACATTCACAAGACCCAACAACTATTGCATTGGGCTTCGCACAATTTCCCTTCCAAATCAATTTGCCTCCTTCACGTTCACCATCCTCACCCTATCGATTCCTCCCCAGATAGAAACCCTTATAGGGATGAAACACGATCTCATTCATTCTTGGACAATGAAAGTAAAAAAATCCATGAACTCTTGGACCAATATGTTGCCACTCTTGTCCAAACAGGGGTAAGGGCACATAAATTGTTGATTGAGATGGACAATATTGAGAAAGGGATTATGGAAGCAATTGCTCAACACAATATTAGATTGCTTGTAATTGGAGCTGCAGCAGACAGATATAACTTGGGGAAATTGGCTGAGCAAGAGTCAACAAAGATTATTCCTGTACATAAACAAGCAGTTCCATCATGTAATATTTGGTTCATTTGCAATGGCAACATCAAATGTACCAGGGTAGATAGTAAACGTACACCTGAAATAGAGACTGCCCCTCCACTGTTGGTGCACAATTCAAATGCAGAAGCCGAACAATCACAGAAGTTTGAATATGAATCGATTCCTAATGGATTGGAACATTTAGATTCTGATGATGTGGAAGAAATTGAAACTGTCAGTTCCCACAGTTCATTACGTTCAAAATGGTCCTCCATTAGTGTTGCTGACAGTTCAAAGTTGTCAGGATTGCTGTTTTGTGAGGAGGAGGTAGATGGTGAAATTGAAGACAAAAGTGAAATAAATGGTAGACTAGAAGAGTCCACTAGAGATTCCAAAAGCATGAGGCGAAAAGAATTTGAAGAGGCTTTAAAGCAGTGGAAAGTCAAAGAAAGTTCTTTGGAGGATGAAGCATTAGAAATGGAAAGCCTGTGTGCTAAGGAGAAAAACAAAAGAAGAGAAGTTGAAGAACAATTGGCCAGAGAGAAGGAAGAATTACAAAAAACAAGGAATCAGCAAGATGAAATAATGTATGAGTTGCAAACTGTCCAAGAACAAAATTCAGCACTTGCTAACCAACTTTGTGAGACACAGGAAGCAGCAAAAGAGTTGGAGGAGAAGATTTTATCAGCTGTGGACCTCTTGATAAGTTTCAAGGAAAAACGAGATAGACTGCAGATAGAGTGCGCAAATGCAGTAAGGCAAGTCCGAGTGCTGAGGGAATTTGGAAAGTCACATACTTCATTTTCTTATGCGGTAGAATTCCCTGTATTTTCTTTCATGGAGATCAATCAGGCAACTAATGATTTTGATCCATCTTGGAAGATTGGAGAAGGAAGATATGGAAGTGTTTACAAAGGAGTGCTTCACAATATGCATGTTGCTATAAAAATGTTACCTTCTTATGGCTGTCACAGCCAATTGGAGTTTGAACGTCAGGTAGCAGTTTTGAGTCGGGTGAGACATCGAAACCTGTTGACACTGATTGGAACCTGTGCCGAGTCTAGGTCACTTGTGTATGAATATCTAAATAATGGCAGCCTTGAAGGTCACCTTGCCCGCAAAGAGAAGTCTCCACTTCCATGGCAAATTCGAATATCCGTTGCTGCTGACATATGTTCTGCTCTAATTTTTCTTCACTCTAGCGAGCCTAGTATTATACACGGGAATTTGAAAGCTAGCAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGCTGACATTGGCATTCATGGTTTAGTTGAGAAGAATGTGGATTCAGCTGACACAACAACAACACACAACAAACCAAATGAAAGTTTGGCATATGTTGATCCAGAGTATCTTGCCACTGGCAAATTCACTCCAGAATCGGATGTGTATTCATTCGGAATCCTGTTGTTGCAACTTCTAACCGGAAGACCACTTTTGGGGCTAGTCAGAGATGTCAAATGTGCATTGGAAAAGGATAACCTTGAAGCAGTATTGGACTTCTCAGCTGGTGAGTGGCCACTTGATCAAACTATACATCTGGCCTATTTAGCATTGAGATGTTGTGACAAGACTTGGCTGAACCGGCCGGACCTCACATCAGATATTTGGGATGTTCTTGAACCATTCAGAACTACATGCATGAACATGCCGCCATATTTGACATCCAAGAAACATCGCCGCACTCCATCCCACTTTGTATGCCCCATTGTGCAGGAGGTAATGGAAGATCCGTACATAGCTGCAGATGGCTTTACGTATGAAGCCGAGGCAATAAGAGAATGGTTGGATAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAGCACACAAATTTAGTGCCTAATTATGCATTACATAATGCAATTCAAGAGTGGCAGCAACTACAGTGA	2367	0.414	MGSIQVAEAEEQDTHTVFVAVGNNIHKTQQLLHWASHNFPSKSICLLHVHHPHPIDSSPDRNPYRDETRSHSFLDNESKKIHELLDQYVATLVQTGVRAHKLLIEMDNIEKGIMEAIAQHNIRLLVIGAAADRYNLGKLAEQESTKIIPVHKQAVPSCNIWFICNGNIKCTRVDSKRTPEIETAPPLLVHNSNAEAEQSQKFEYESIPNGLEHLDSDDVEEIETVSSHSSLRSKWSSISVADSSKLSGLLFCEEEVDGEIEDKSEINGRLEESTRDSKSMRRKEFEEALKQWKVKESSLEDEALEMESLCAKEKNKRREVEEQLAREKEELQKTRNQQDEIMYELQTVQEQNSALANQLCETQEAAKELEEKILSAVDLLISFKEKRDRLQIECANAVRQVRVLREFGKSHTSFSYAVEFPVFSFMEINQATNDFDPSWKIGEGRYGSVYKGVLHNMHVAIKMLPSYGCHSQLEFERQVAVLSRVRHRNLLTLIGTCAESRSLVYEYLNNGSLEGHLARKEKSPLPWQIRISVAADICSALIFLHSSEPSIIHGNLKASKVLLDANFVAKLADIGIHGLVEKNVDSADTTTTHNKPNESLAYVDPEYLATGKFTPESDVYSFGILLLQLLTGRPLLGLVRDVKCALEKDNLEAVLDFSAGEWPLDQTIHLAYLALRCCDKTWLNRPDLTSDIWDVLEPFRTTCMNMPPYLTSKKHRRTPSHFVCPIVQEVMEDPYIAADGFTYEAEAIREWLDSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQLQ	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g02353	788	Gene3D	HUPs	15	142	IPR014729	-
	Adu09g02353	788	Coils	Coil	282	351	-	-
	Adu09g02353	788	ProSiteProfiles	U-box domain profile.	717	788	IPR003613	GO:0004842\|GO:0016567
	Adu09g02353	788	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	29	129	-	-
	Adu09g02353	788	CDD	STK_N	16	166	-	-
	Adu09g02353	788	Pfam	U-box domain	719	785	IPR003613	GO:0004842\|GO:0016567
	Adu09g02353	788	SMART	Ubox_2	721	784	IPR003613	GO:0004842\|GO:0016567
	Adu09g02353	788	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 32	11	787	-	-
	Adu09g02353	788	Coils	Coil	380	400	-	-
	Adu09g02353	788	ProSitePatterns	Protein kinases ATP-binding region signature.	441	462	IPR017441	GO:0005524
	Adu09g02353	788	PANTHER	OS02G0152300 PROTEIN	11	787	-	-
	Adu09g02353	788	Pfam	Protein tyrosine and serine/threonine kinase	440	687	IPR001245	GO:0004672\|GO:0006468
	Adu09g02353	788	CDD	RING-Ubox_WDSUB1_like	722	763	-	-
	Adu09g02353	788	ProSiteProfiles	Protein kinase domain profile.	435	700	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu09g02353	788	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	717	788	IPR013083	-
	Adu09g02353	788	SUPERFAMILY	Protein kinase-like (PK-like)	411	696	IPR011009	-
	Adu09g02353	788	Gene3D	Phosphorylase Kinase; domain 1	408	507	-	-
	Adu09g02353	788	Gene3D	Transferase(Phosphotransferase) domain 1	508	703	-	-
	Adu09g02353	788	SUPERFAMILY	RING/U-box	716	785	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02353	Adu-Chr9	110743559	110749082	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g02353	77	785	U-box Gene Family	AT3G49060	44.912	0.0	578

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Adu09g02353		PK_Tyr_Ser-Thr	7e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02353	-		-	aprc:113871315	1008.44