LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02284	ATGGAGGGAGGAGCACCGCAATCCACCGGAGGAGGAGCAGGAGGTGGACCGGCGCCGTTCTTGTTGAAGACTTATGACATGGTTGACGATTCCGCCACCGATGACATCGTTTCTTGGAACAGCTCCACCAACAACAGCTTCGTTGTTTGGAACCCGCCAGAGTTTGCGCGCCTTCTTCTACCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAATACCTATGGATTTCACAAAATACATCCTGAACGGTGGGAGTTTGCTAATGATGATTTTATGAAAGACCAAAAGCATCTTCTTAAGAATATCCACCGCCGGAAACCCATTCACAGTCATAGTCATCCTCCCGGCTCTGTTGTGGATCCAGAAAGGGCAGCATTTGAGGAAGAAATTGAAAAACTTAACCGTGAGAAATCTTCCATTGAATCTAATATTTTCAGCTTTAAACAACATCAATCAACAGCGAAGCTTCATCTAGAAGAGTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACATTTGCTGAACATTTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACAGTTTTCCCGGAAAATTGAGTCCATGGATTTATCAGCATATAACAAGAAAAGACGATTGCCTCAAGTTGATGACATGCAACCTGTTGTAGAAAGTAGTTTTGTGGACAATCCTAACAATTTTAGAATGGAATTTGGGAACGTTTTCCATCAAGATTTCTCGAACAAACTCAGACTGGAATTGTCACCAGCTGTGTCAGATATGAACTTAGTGTCACGTAGCACACAAAGTTCAAATGAAGATGGGGAAAGTCCACAGAAGAAAATATCTGAAGGTGAACAAACAGGAACCCAGACAAGAACATCTGTTCCTTTTGCACCGGAAACATTGGAGCTTGCTGATACCGGGGCATCTTTTACTTTCAAGATGGATTCATGTTTATCACAAAGAGCGACAAATTCTGAGAGCCCAAAACTGTGTACGTTGGAGCCAAGTAGTGAAGAAGGTGACAGTCACATATCCTGCCAACTTACTTTGGCATCGTGCCCGTTTAAGGTCAATAGAAATCCATACTCAGCAAAAGCATCCCAAATAGATTCTCAAGAAATTGGCAAGCTGGCAGAGCCTAGGTTTCATTCCAACAGTAAAGAATCCGACAGTGGAGTTTTCTCAAACCGAAACCAAGCTAATGATGCAACCAATTTGGCTTCTTCACTGGAAACTCCAAGTAACAACCAAGTTACTCAGCCAAACAGGGTAAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGCTCAGACAATGAAGAGGCAATATCCAATTACAGAGGAAACCCATGCGATGAGCAAGATGAAGGAAGGTTGAATGCAAGGAATGTTAAGAACATGGATCAGCTTACACTTTAA	1440	0.4257	MEGGAPQSTGGGAGGGPAPFLLKTYDMVDDSATDDIVSWNSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFMKDQKHLLKNIHRRKPIHSHSHPPGSVVDPERAAFEEEIEKLNREKSSIESNIFSFKQHQSTAKLHLEEFQQRLDGMEKRQKHLLNIFEKALQNPTFVEQFSRKIESMDLSAYNKKRRLPQVDDMQPVVESSFVDNPNNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKISEGEQTGTQTRTSVPFAPETLELADTGASFTFKMDSCLSQRATNSESPKLCTLEPSSEEGDSHISCQLTLASCPFKVNRNPYSAKASQIDSQEIGKLAEPRFHSNSKESDSGVFSNRNQANDATNLASSLETPSNNQVTQPNRVNDVFWEQFLTERPGCSDNEEAISNYRGNPCDEQDEGRLNARNVKNMDQLTL	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g02284	479	Pfam	HSF-type DNA-binding	20	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	SUPERFAMILY	"Winged helix" DNA-binding domain	16	110	IPR036390	-
	Adu09g02284	479	SMART	hsfneu3	16	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	Coils	Coil	128	148	-	-
	Adu09g02284	479	Gene3D	-	15	111	IPR036388	-
	Adu09g02284	479	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	13	474	IPR027725	-
	Adu09g02284	479	Coils	Coil	163	183	-	-
	Adu09g02284	479	MobiDBLite	consensus disorder prediction	265	295	-	-
	Adu09g02284	479	PRINTS	Heat shock factor (HSF) domain signature	20	43	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Adu09g02284	479	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-5	13	474	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02284	Adu-Chr9	109205624	109209979	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g02284	20	479	HSF	AT4G13980	56.170	3.73e-164	470

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Adu09g02284		HSF_DNA-bind	1e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02284	K09419		-	gmx:100786408	757.673