LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02197	ATGAGTCGAATACTCGGTCCCGGTTTCCGCTTCCACCCTACGGACGACGAACTAGTTCAATACTATCTCCGCCGGAAGGTCATCGGAAAACTCAACCACCACGACCACATCGGCGTCATCAATATCTACGACTATGAGCCATGGCAACTCCCCGAATTGTCGAAGCTGAATACTAGGGATTTGGAATGGTATTTCTTCACGGTTCTGGACAAGAAGTACGAGAAGGGGGAGAAGACAAAACGCGCCACCGTCAACGGTTACTGGAAGACCACCGGCAAGGATCGTGGAATCAAGTATGGCGATCGCCAAGTAGGCATGAAGAAGACCCTCGTTTACCATGAAGGAAGGGCCCCGACTGGCAAAAGATCAAATTGGGTCATGCACGAGTACCGGATGGTCGATGAGCAATTGGCGGAAGTCGGATATCAGCTGGACGCTTTTGTGCTGTGTAGAATTTTTGAGAAGAGCGGGATGGGCCCTAAGAATGGAGAGAAGTATGGTGCTCCCTTTAGAGAGGAGGACTGGGTGGAGGATGGCGACCTGCTTGAACCGATTGCTGATGAACCTGTGGTTGAGCTGTCTGTTGACCAGAGTGATGCTTTCCTTGAAACTGATGACCTTGAGAAGAAACTTGGTACGCATGTGGTCGATGGAAGTGCTGATTTACCACCAAACCCTCCCAACTACTTTTATGGGGAGTGTAGTCACTATCCTCAGCATCAAGAAGAATTTGTTGAAGTTCCGAAACCTTTGGAAGGCACTGAAGGCCGGAATTTCGATGTAACTGGGCCATATGCTGAGGATACCTGTTTAGAAAATCATGAAATGAACCATAATGGGAATTCTTCAGAATTCATTTATGGTGACGTTAATTCAGATGAATTCATGGATTCCATTGTTGATCCTCTGATTGGTGCTGAATTATTCCTGGAAACAGATGATCTTCTGAACCCAATCGAGGGAAATTCCTCTGGGGCAGATCCTTATACAGTTGAGGGAAATCACCCTAGGGCCGATCCCTACGCAACTGAGGGAAATCCCCCTGGGCCAGATCCCTACACAGCTGAGGGAAATTATCCTGGGACAGATCCTTATGCTGTGGATATGTTAGATGAGTATCTTGCACTTCCAGATGATGATATTCTGAGATATATATCTTTTGATGATTCTCCTCCATCAATGGAGGGTGAACACCCTATTCTAGAGCAGATACCACCTCTTATCCAGCAGAATGTGGAGGAAGAGGCCAAGGATGTTTCAGAGGAGAAACAACAAAAGGTGGAGGGAGAAGCTGCAAATATTTTCAAGACAAACAAACATGACCTTGAAGCAAATTCTAGCCGTGGAGGAGCTGCTTCAGATGATGCAAATCCAATTGCAAAACGCTTCAAGAAATGGTTGGAAGACATCCCAGCTGCTCCCGCATTTGCTGCAGAGCTTCCATCCAAGAAGGATGCACTCCGGCTTCATTCTGCACCTCAGTCTTCAAATACTACTCATGTAACTGCAGGAATGGTCAGCATTACAAACATTACTGCAAGAGGCAATCACATGAATCCGATGGTGGAAAAGATTGGAGGAGGGTTCAACCATCCCATTATCTCTGCTGTTGTTTTGATACCTGTTTCTGGCTTACTTTGTGGCAAGACTCTGTTTGTGCTGACATATGGATGGGCTTTTCTGGTGACGTTTTCATTTCTGTTTGCCACCGTGACTTGCAAAATTGGAACCTTCATGTATTCTGGAAAATGA	1752	0.4635	MSRILGPGFRFHPTDDELVQYYLRRKVIGKLNHHDHIGVINIYDYEPWQLPELSKLNTRDLEWYFFTVLDKKYEKGEKTKRATVNGYWKTTGKDRGIKYGDRQVGMKKTLVYHEGRAPTGKRSNWVMHEYRMVDEQLAEVGYQLDAFVLCRIFEKSGMGPKNGEKYGAPFREEDWVEDGDLLEPIADEPVVELSVDQSDAFLETDDLEKKLGTHVVDGSADLPPNPPNYFYGECSHYPQHQEEFVEVPKPLEGTEGRNFDVTGPYAEDTCLENHEMNHNGNSSEFIYGDVNSDEFMDSIVDPLIGAELFLETDDLLNPIEGNSSGADPYTVEGNHPRADPYATEGNPPGPDPYTAEGNYPGTDPYAVDMLDEYLALPDDDILRYISFDDSPPSMEGEHPILEQIPPLIQQNVEEEAKDVSEEKQQKVEGEAANIFKTNKHDLEANSSRGGAASDDANPIAKRFKKWLEDIPAAPAFAAELPSKKDALRLHSAPQSSNTTHVTAGMVSITNITARGNHMNPMVEKIGGGFNHPIISAVVLIPVSGLLCGKTLFVLTYGWAFLVTFSFLFATVTCKIGTFMYSGK	583

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu09g02197	583	MobiDBLite	consensus disorder prediction	323	351	-	-
Adu09g02197	583	SUPERFAMILY	NAC domain	5	155	IPR036093	GO:0003677\|GO:0006355
Adu09g02197	583	Pfam	No apical meristem (NAM) protein	7	132	IPR003441	GO:0003677\|GO:0006355
Adu09g02197	583	ProSiteProfiles	NAC domain profile.	5	155	IPR003441	GO:0003677\|GO:0006355
Adu09g02197	583	Gene3D	NAC domain	14	158	IPR036093	GO:0003677\|GO:0006355
Adu09g02197	583	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	4	250	-	-
Adu09g02197	583	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	347	578	-	-
Adu09g02197	583	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 53-LIKE	347	578	-	-
Adu09g02197	583	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 53-LIKE	4	250	-	-

Showing 1 to 9 of 9 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02197	Adu-Chr9	107197065	107200451	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g02197	370	572	NAC Transcription Factor Family	AT5G04410	27.442	5.45e-10	60.1

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Adu09g02197		NAM	2e-34	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02197	-		-	adu:107466644	1214.13

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu09g02197	09	107197065	107200451	Adu09g02197	09	107197065	107200451	ECH

Showing 1 to 1 of 1 entries

Previous1Next