Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02167 ATGGATGTTGACTCGGAACCACTCAGTTCACAAGACAACGTCGACGATTCCATGATGACTAGTGTGGAAGAAAATGTTAACTGCACTTGTGATTGCGGTGGCAGCAGTAGTAAGTGTGTGTCTGTGACGGCCGATGATATTATAAACCAGACCTTTGAAACATCAGATGCAGCTTATAACTTGTATGTACGTTATGTGAGGTGTCTCGGGTTTGGAGTTTGCAAAGGTAATACAACACGTGGAAAAGATGGAACACAGCGTAGAAGGAGGTTTTTTTGCAGCAAGGAAGGAAAGAGAGCCGAGAAATACATATCTAGTTTGAGTAGGAAGCGGGAGCATAGAGCGCTGACTCGCACTGGTTGTGAAGCCATGCTTGCGGTaacaacatcaaggtgtgaggcgATAAACAACTTCATTAAGAGGTTTATTGGCATTCGCCAAAGTCTTCTAGAGTTGGTCAAAAATCTTGAACATGCTCTTAGGGACTATAGAAACAATGAATTAGTTTCTCAATTTAAGACGCTGTATGGGGAGCCCGTTCTAACTTCTGGGCTAGAAGCGTTGGAGCTTTCTGCTGCCAATTTTTACACTAGGGAGATTCTTGGAGAAGTAAAAAAGGAGATTCAAGGAGTAGTCGCATTAGATGTAATAAATGAGAAAAACATATCAACCACTGTTGTGTTAAAAGTTAAGGAATGTGACAGGAGACAACATATTTATAACGTACTTTACGATCGCAATACTGAGCATATGAAGTGTGAATGTAGTCGGTGGAGTAGTGAAGGCATTCCTTGCAGGCACATGTTTTGTGCAATGAAAAGGGTAGGTTTACAGAAGTTGCCAGATAGTCTTCTTTTGAGAAGATGGTCGAAGGATGCCAAGAAGTATCTGGATGAAAGATCTGCTGGAGGCACTACGCAAGACAGAGAAAGAGAATTTTTAATGCGCTATGGCGCATTGTCAGTGGCAGCTACGTGGATGGTATTCTTAGGAGCTCAAGATGGTCCTTCTTTCCATGACACTATGAATGAAGTCTATCGTTGGACCCAAACACTAGAACAAAAATCTGACTTGAAAAGACAAACAACAAATTCTACCACGCCAAACTTTGTTGGTGACCCTTCGGTGGTCAAGACAAAAGGAGCATCCAAGGGGAAAAAGAAGAGGGGTAAACGGAGGTGCACTAAATGCAACATTGCTGGTCATGTAAAGAATAAATGTCCTGTGAGGAATGACGGTGACAATTTGGGGGATAAGACTGGTAATGGCGCGCAAGCTAGCTTTGGTACCAAGGAGGAGCTTCCCAAGGACCCTATGGCTTCTCAAGAGACATTAGCAGTGCCAAATACAGAAGTAAATGTACCTGTGCAGCAAGAGTCTGGGCTAGGTGATTCAGGATTGATTAATGGCCATGAGAATCCCATCCCACCGTATGAAAGTCATCAGTGGCTATTACAGGTTGTACAACAAGGACATTATTCGAAGTTCAATGGGATGCAGTAG 1503 0.4232 MDVDSEPLSSQDNVDDSMMTSVEENVNCTCDCGGSSSKCVSVTADDIINQTFETSDAAYNLYVRYVRCLGFGVCKGNTTRGKDGTQRRRRFFCSKEGKRAEKYISSLSRKREHRALTRTGCEAMLAVTTSRCEAINNFIKRFIGIRQSLLELVKNLEHALRDYRNNELVSQFKTLYGEPVLTSGLEALELSAANFYTREILGEVKKEIQGVVALDVINEKNISTTVVLKVKECDRRQHIYNVLYDRNTEHMKCECSRWSSEGIPCRHMFCAMKRVGLQKLPDSLLLRRWSKDAKKYLDERSAGGTTQDREREFLMRYGALSVAATWMVFLGAQDGPSFHDTMNEVYRWTQTLEQKSDLKRQTTNSTTPNFVGDPSVVKTKGASKGKKKRGKRRCTKCNIAGHVKNKCPVRNDGDNLGDKTGNGAQASFGTKEELPKDPMASQETLAVPNTEVNVPVQQESGLGDSGLINGHENPIPPYESHQWLLQVVQQGHYSKFNGMQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02167 500 ProSiteProfiles Zinc finger CCHC-type profile. 392 408 IPR001878 GO:0003676|GO:0008270
Adu09g02167 500 MobiDBLite consensus disorder prediction 410 436 - -
Adu09g02167 500 Coils Coil 146 166 - -
Adu09g02167 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 128 309 IPR031052 GO:0006355
Adu09g02167 500 SMART 26again6 251 278 IPR006564 GO:0008270
Adu09g02167 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 128 IPR031052 GO:0006355
Adu09g02167 500 Pfam FAR1 DNA-binding domain 61 130 IPR004330 -
Adu09g02167 500 ProSiteProfiles Zinc finger SWIM-type profile. 240 276 IPR007527 GO:0008270
Adu09g02167 500 MobiDBLite consensus disorder prediction 358 393 - -
Adu09g02167 500 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 50 128 - -
Adu09g02167 500 SUPERFAMILY Retrovirus zinc finger-like domains 382 412 IPR036875 GO:0003676|GO:0008270
Adu09g02167 500 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 128 309 - -
Adu09g02167 500 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02167 Adu-Chr9 106478090 106480771 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu09g02167 FAR1 4e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02167 - - ahf:112717474 673.315