Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu09g01983 | ATGTATCGAACGCTTAGATGGATAGATAGATGCATAGCAGGTAATTATAGACCTCACGATCAGAACTTGTTTGGTATTGTACAAGGTGGTTTAGATCCTGAGTTGAGTGCTTTGGGTGCAGACATGTATGATTGTGTCTACCCCACCCGTACAGCACGTTTTGGCACTGCGCTTATTCTTGAGGGAGTACTAAAACTAAAACATAGAGCCATGGCTGATGATACTCGACCAATTGATCCTACCTGCCCTTGTATGGTTTACAAGAACTACACCAGGACCTACATCAATTGCCTTGTCACTAAAGACGCCGTGGAGTCTCAGCTTCTATCATATCATAATTTATATTACATGATGCGGTTCCCCAAAGGTGATGTTCTTGAATGGGTCTGCAATGCTATGGAGGTGGCCGAAATCGACATTTTTTTGCAGGATGTGGTTACCAAAAATGAATTTGAGAAAAACTTACTTGGTGATGTTATTCCACCAACCGATATTAGGGTGACATTCGATGATATTGGAGCTTTGGAAAATCCTTGCAAAGGAATATTGCTTTTTGGCTCCCCTGGCACAGGAAAAACTATGCTTGCAAAAGCTGTAGCAACTGAAGCTGGAGCGAATTTCATCAACATTTTAATGTCCGACATTACTTCAAAGATATTAGAAGTTTTACAAATTGAAACTTCTATGTTCCTTTTGTGCTTAAGCATCACGGTGATATCATTTTTGTTTGTTGCAGTGGTTTGGTGA | 747 | 0.4043 | MYRTLRWIDRCIAGNYRPHDQNLFGIVQGGLDPELSALGADMYDCVYPTRTARFGTALILEGVLKLKHRAMADDTRPIDPTCPCMVYKNYTRTYINCLVTKDAVESQLLSYHNLYYMMRFPKGDVLEWVCNAMEVAEIDIFLQDVVTKNEFEKNLLGDVIPPTDIRVTFDDIGALENPCKGILLFGSPGTGKTMLAKAVATEAGANFINILMSDITSKILEVLQIETSMFLLCLSITVISFLFVAVVW | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu09g01983 | 248 | CDD | AAA | 180 | 230 | - | - | |
| Adu09g01983 | 248 | Gene3D | - | 143 | 220 | IPR027417 | - | |
| Adu09g01983 | 248 | Gene3D | - | 1 | 35 | IPR036511 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | Gene3D | - | 36 | 123 | IPR036511 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | TIGRFAM | tgt_general: tRNA-guanine family transglycosylase | 37 | 120 | IPR002616 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | Pfam | Queuine tRNA-ribosyltransferase | 34 | 120 | IPR002616 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | Pfam | Queuine tRNA-ribosyltransferase | 1 | 35 | IPR002616 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 167 | 223 | IPR027417 | - | |
| Adu09g01983 | 248 | PANTHER | QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 | 1 | 35 | - | - | |
| Adu09g01983 | 248 | PANTHER | QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 | 36 | 120 | - | - | |
| Adu09g01983 | 248 | SUPERFAMILY | tRNA-guanine transglycosylase | 1 | 121 | IPR036511 | GO:0006400|GO:0016763 | |
| Adu09g01983 | 248 | Pfam | ATPase family associated with various cellular activities (AAA) | 182 | 221 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu09g01983 | Adu-Chr9 | 100152505 | 100158665 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu09g01983 | 178 | 220 | Calmodulin-binding Proteins | AT3G56690 | 46.512 | 5.34e-06 | 45.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu09g01983 | K00777 | - | gmx:100819664 | 203.371 |