Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01966 ATGGATTCCACTTCTCACTTCTTCAACTCTCCCACCTCCGATAACTCCTCCTCCTCCTCTTTCGGCTCCTTTAGCAACTCCTCAGAGTCATTCTCGTGGAATGGGTACCTTCCATTCAACGAGAACGACCCTGAAGAGATGCTCCTCTATGGCATGATTGCCACCGCCGACACCCCTCGCCAGGGTCCCCTGGAGAGGGTAAAGGAGGAGGAGGTTAGCTCAGAGGAAAATGGTGGCGATTGTGCCGCAACAGAAAGGAAGGAGAAGTCGTACAGAGGTGTCAGGAGAAGACCGTGGGGAAAGTTTGCGGCCGAGATAAGAGACTCAACTCGGCACGGCATAAGGGTGTGGTTGGGGACATTCGACAGTGCGGAAGCAGCGGCTATGGCTTATGATCAAGCCGCTTTTTCGATGAGGGGAACGGCAGCGATCCTTAATTTCCCGGTGGAGACGGTGAAGCAGTCGCTTAGGGAGATGAACTATGGTGGTGATGGAGAAGAAGGGTGCTCCCCTGTTGTAGCCTTGAAGAGGAAGCACTCATTAAGGAGGAAAATTGGTATTAAGAAGAACAACAACAATGTTAAGGACAGGGACAATGTTGACGATAATCTTAGGTTAGATAATGCAGTGGTGTTTGAGGATCTTGGTGCTGATTACTTGGAACAATTGTTGATGTCGTCTGATCAGATTCCTAATCCTTGGTGA 705 0.5007 MDSTSHFFNSPTSDNSSSSSFGSFSNSSESFSWNGYLPFNENDPEEMLLYGMIATADTPRQGPLERVKEEEVSSEENGGDCAATERKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAAMAYDQAAFSMRGTAAILNFPVETVKQSLREMNYGGDGEEGCSPVVALKRKHSLRRKIGIKKNNNNVKDRDNVDDNLRLDNAVVFEDLGADYLEQLLMSSDQIPNPW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01966 234 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 226 - -
Adu09g01966 234 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 PANTHER DNA-BINDING DOMAIN 32 226 IPR044808 GO:0003700|GO:0009873
Adu09g01966 234 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 MobiDBLite consensus disorder prediction 62 89 - -
Adu09g01966 234 MobiDBLite consensus disorder prediction 60 89 - -
Adu09g01966 234 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 Pfam AP2 domain 90 140 IPR001471 GO:0003700|GO:0006355
Adu09g01966 234 SUPERFAMILY DNA-binding domain 90 150 IPR016177 GO:0003677
Adu09g01966 234 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Adu09g01966 234 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01966 Adu-Chr9 99309662 99310708 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01966 37 228 AP2-EREBP Transcription Factor Family AT3G23240 59.794 3.13e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu09g01966 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01966 K14516 - gmx:100804481 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00267 06 3269520 3270173 Adu09g01966 09 99309662 99310708 ECH
Adu02g00823 02 13349455 13350195 Adu09g01966 09 99309662 99310708 ECH
Adu09g01966 09 99309662 99310708 Adu09g01966 09 99309662 99310708 ECH