Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu09g01891 | ATGGCATCTCCATTCAACACGCTTAAAGATCTTGACCTTGCTGCTGCTAATCAAGTTTGGCGTATCAAAATTCGTGTTATCAAGATATGGTCTATTATCATAGGTGAAGAAAAGTTTAGGAGGCCCAACTTGGAACTGGTTGTTATGGATGAATTAGGTCATCGGATACAGTGTTCTGTTAGGAATCCTCTAAGGAGATTCTTTGAACATGATTTAATTGAGGGTAAGGTGTACTCTATTGCCAATTTCTCACTTGAACCTAATAATCAGAAGTACAAGCCAACAACCCATGCTCTTCGTCTTTTCTTCAAGAGGGAAACTCAATGTCGTTCATTAGAGGATATTAACTTCCCTAACAATGTTTTTCACTTTGTCCCAAATGAAATGATACTTAATCATGATAATCACCACTCTCACTTGATAGATGTCATTGGATTATTAACCGGAAAGGGTGATATAATAGAGTTCACAAAGAATGGAAAGAAGTCTATATACATGGTGATTGAGCTTGATGATATGAAATCTAAGGGTAAAATAAGGTGTACTTTGTGGGAGGATTTTGCTAATAAACTGGTGAAACACATGGAGGAACAGCCTTCTACTGAATTTATAATCATCCTGCAATTTGCCAAGTTTAACATGTTCAAGGGAACTATGGGCATATCTAATACAAACTATAACTCTACCTTATACATTAATGCTGACCTTCAAGAGGTTAAGGAATTTAGACAGAGATTTATTATGGGAAATGACAAGGCTTCTAACCAGCTTTCTCAAATTGCATCTGATGTTTCAATGTCACTTGAGCAAGATCTTATTAGCCATACCCCATACAAGCCCATTTCTGAACTTAAGGAATCCACTGAGGGTGGAATATTTGTTACTATTGGAACAGTCATGTCCATTGATACTAGATTCGGTTGGTGGTATAAGGGGTGTAAGATGTGCTTTCATTCACTCAAAGAGGATGAGAATTCATACTATTGCCAATCATGTGATATTTATCCTAATATTCATATTCCTCGAGTATCTGATGAAATGGATTCTGCCTCATTTATTATTTATGATAAGGAAGCCTCCAAGTTTCTTGAAATTTCTGCTTCTGAGCTTCGATTGAAACAGATAGCAAAGGGTTACAACAAGGATGAATTTCCCTTTGAGATAAACTCATTTAGAGGTAAGAAGTTCCTATTCAAGGTTTCTGTCAAGCTCGATGATATCAATGCTTTCCAGCCTTGCAAGATAACTGTTTTGAAGTTGACTGAAGATCCAACTATCCTGAATTTGTTTGCTGCCAAGTACAAGCTATCTGATCCGAACATCCCCATTGAAAACTCTGAGCTCCAGAGCTTACATACAGATTCTACTGATAATGCTAAGGAGATCAGTTCTCAGTCATGTGAAATTATTTCTCTTGACGTTAATGATGACTTTGTTACTCCCAAGAGAGACATGAGTAAGAACTCTTACATTCCTGAAGATTTTGATCAAGACCGAACTTTTTATCTCCAGATTGATCCTTCTTCGATACTGCCTGAGATTCCATCAATTTTCTATAGAAAATACAAGGAGCAATTGAATCAAAGGATGTATTTCATTGACCTTAATGAAAACCAAGTTGAGGTATTGATTCGAAAGGGTCACTCATGTGGTTACATTTTAGCTGGGTTTGATACTTTGGTTCGATTTTATGGACTTAAAGATGGAGGATGGATGAAAGTTATGTTTATTGGGGAGGATCTTTTCTTAATTATTAAGGTAAAGGATTCGTCAATGACAACTAAGGCATTTTCTTCTCCTCCGGTAAAATTTTTTCTTGAGGTGAAACCTTCATCTGTTGATGTGAATGGGTTCTCTCTCCCCACAAGCCAGATTAATTCAGTTGGCATGTTTCTTGGTGGTGATACTCAATCCCATGGATTACCAAAGCCACCCAATTCAGTATTGAGAGAGAACTATAACTCCTTTTCATATCCTGTTTCTTTTGGCTCAGTATCTACTAATACTTCTCATGGTGTTTACCATACTACATCCAATAATAAAACATTATTAACTGATTCTAGCATCCCTTCTACTCATCCAGAACCAAATTCTGGTACTCATCAAATGATGACCGGTTGCTATGGCCCTATCCACGAGCTTGCTGTTTCCTCTTTAGTGGGCAATAATAATGGTAGCTATCCACTAACAGTCTCCTTTGAATACACTGATCCAATTGCTATAAATATTAGTGGAGAAAGCAATATTTCAACCACTCCTCCTGTTAATCATAATAACTCATTGGATCATATACCCATGTCAATCCCAATGCAAAATGGCTCAAGAAGTGGTGTTCAAATCACCTCAGATTATATTTCTTGCCTCAAGCTTTTGTCTGATCACCAGATTTCAAACAACTATATTATACTTCCTAATGCGTTTGCTAAGAATGCATTTCCAAGTAGGCCTGAGACCATAATGGTTAGGTTGGACAAATTCAGTCCAATGAGGATGGGATTACGATGGAACAATAAAAGGAATCTACAACTATTTTTTACTAAGGGTTGGAAGTTTTTTGCAAAGATGCATAGATTCAAGGAAGGAACATTGTTGAAGTTTTCTGTTTCAACTGGGGATGAAAGTGTGATGTACGATAAAGTTGTGCATTTGTAA | 2652 | 0.3684 | MASPFNTLKDLDLAAANQVWRIKIRVIKIWSIIIGEEKFRRPNLELVVMDELGHRIQCSVRNPLRRFFEHDLIEGKVYSIANFSLEPNNQKYKPTTHALRLFFKRETQCRSLEDINFPNNVFHFVPNEMILNHDNHHSHLIDVIGLLTGKGDIIEFTKNGKKSIYMVIELDDMKSKGKIRCTLWEDFANKLVKHMEEQPSTEFIIILQFAKFNMFKGTMGISNTNYNSTLYINADLQEVKEFRQRFIMGNDKASNQLSQIASDVSMSLEQDLISHTPYKPISELKESTEGGIFVTIGTVMSIDTRFGWWYKGCKMCFHSLKEDENSYYCQSCDIYPNIHIPRVSDEMDSASFIIYDKEASKFLEISASELRLKQIAKGYNKDEFPFEINSFRGKKFLFKVSVKLDDINAFQPCKITVLKLTEDPTILNLFAAKYKLSDPNIPIENSELQSLHTDSTDNAKEISSQSCEIISLDVNDDFVTPKRDMSKNSYIPEDFDQDRTFYLQIDPSSILPEIPSIFYRKYKEQLNQRMYFIDLNENQVEVLIRKGHSCGYILAGFDTLVRFYGLKDGGWMKVMFIGEDLFLIIKVKDSSMTTKAFSSPPVKFFLEVKPSSVDVNGFSLPTSQINSVGMFLGGDTQSHGLPKPPNSVLRENYNSFSYPVSFGSVSTNTSHGVYHTTSNNKTLLTDSSIPSTHPEPNSGTHQMMTGCYGPIHELAVSSLVGNNNGSYPLTVSFEYTDPIAINISGESNISTTPPVNHNNSLDHIPMSIPMQNGSRSGVQITSDYISCLKLLSDHQISNNYIILPNAFAKNAFPSRPETIMVRLDKFSPMRMGLRWNNKRNLQLFFTKGWKFFAKMHRFKEGTLLKFSVSTGDESVMYDKVVHL | 883 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu09g01891 | 883 | CDD | RPA1_DBD_B_like | 142 | 247 | - | - | |
Adu09g01891 | 883 | PANTHER | BNAC07G49340D PROTEIN | 49 | 481 | - | - | |
Adu09g01891 | 883 | SUPERFAMILY | DNA-binding pseudobarrel domain | 781 | 869 | IPR015300 | - | |
Adu09g01891 | 883 | Gene3D | - | 269 | 426 | IPR012340 | - | |
Adu09g01891 | 883 | ProSiteProfiles | B3 DNA-binding domain profile. | 786 | 883 | IPR003340 | GO:0003677 | |
Adu09g01891 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 135 | 246 | IPR012340 | - | |
Adu09g01891 | 883 | SUPERFAMILY | DNA-binding pseudobarrel domain | 511 | 586 | IPR015300 | - | |
Adu09g01891 | 883 | Gene3D | - | 116 | 257 | IPR012340 | - | |
Adu09g01891 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 276 | 423 | IPR012340 | - | |
Adu09g01891 | 883 | CDD | RPA1_DBD_C | 281 | 439 | IPR013955 | - | |
Adu09g01891 | 883 | Pfam | Replication factor-A C terminal domain | 293 | 421 | IPR013955 | - | |
Adu09g01891 | 883 | Gene3D | - | 9 | 115 | IPR012340 | - | |
Adu09g01891 | 883 | CDD | RPA1_DBD_A_like | 21 | 107 | - | - | |
Adu09g01891 | 883 | Pfam | B3 DNA binding domain | 790 | 870 | IPR003340 | GO:0003677 | |
Adu09g01891 | 883 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 49 | 481 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Adu09g01891 | 883 | Pfam | Domain of unknown function DUF223 | 45 | 133 | IPR003871 | - | |
Adu09g01891 | 883 | SUPERFAMILY | Nucleic acid-binding proteins | 5 | 115 | IPR012340 | - | |
Adu09g01891 | 883 | Gene3D | - | 774 | 881 | IPR015300 | - | |
Adu09g01891 | 883 | CDD | B3_DNA | 790 | 866 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu09g01891 | Adu-Chr9 | 94737329 | 94743158 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu09g01891 | 20 | 417 | Core DNA Replication Machinery Family | AT5G08020 | 25.355 | 1.84e-17 | 85.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Adu09g01891 | Rep_fac-A_C | 1.3e-09 | CL0021 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu09g01891 | - | - | adu:107490971 | 817.379 |