Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01891 ATGGCATCTCCATTCAACACGCTTAAAGATCTTGACCTTGCTGCTGCTAATCAAGTTTGGCGTATCAAAATTCGTGTTATCAAGATATGGTCTATTATCATAGGTGAAGAAAAGTTTAGGAGGCCCAACTTGGAACTGGTTGTTATGGATGAATTAGGTCATCGGATACAGTGTTCTGTTAGGAATCCTCTAAGGAGATTCTTTGAACATGATTTAATTGAGGGTAAGGTGTACTCTATTGCCAATTTCTCACTTGAACCTAATAATCAGAAGTACAAGCCAACAACCCATGCTCTTCGTCTTTTCTTCAAGAGGGAAACTCAATGTCGTTCATTAGAGGATATTAACTTCCCTAACAATGTTTTTCACTTTGTCCCAAATGAAATGATACTTAATCATGATAATCACCACTCTCACTTGATAGATGTCATTGGATTATTAACCGGAAAGGGTGATATAATAGAGTTCACAAAGAATGGAAAGAAGTCTATATACATGGTGATTGAGCTTGATGATATGAAATCTAAGGGTAAAATAAGGTGTACTTTGTGGGAGGATTTTGCTAATAAACTGGTGAAACACATGGAGGAACAGCCTTCTACTGAATTTATAATCATCCTGCAATTTGCCAAGTTTAACATGTTCAAGGGAACTATGGGCATATCTAATACAAACTATAACTCTACCTTATACATTAATGCTGACCTTCAAGAGGTTAAGGAATTTAGACAGAGATTTATTATGGGAAATGACAAGGCTTCTAACCAGCTTTCTCAAATTGCATCTGATGTTTCAATGTCACTTGAGCAAGATCTTATTAGCCATACCCCATACAAGCCCATTTCTGAACTTAAGGAATCCACTGAGGGTGGAATATTTGTTACTATTGGAACAGTCATGTCCATTGATACTAGATTCGGTTGGTGGTATAAGGGGTGTAAGATGTGCTTTCATTCACTCAAAGAGGATGAGAATTCATACTATTGCCAATCATGTGATATTTATCCTAATATTCATATTCCTCGAGTATCTGATGAAATGGATTCTGCCTCATTTATTATTTATGATAAGGAAGCCTCCAAGTTTCTTGAAATTTCTGCTTCTGAGCTTCGATTGAAACAGATAGCAAAGGGTTACAACAAGGATGAATTTCCCTTTGAGATAAACTCATTTAGAGGTAAGAAGTTCCTATTCAAGGTTTCTGTCAAGCTCGATGATATCAATGCTTTCCAGCCTTGCAAGATAACTGTTTTGAAGTTGACTGAAGATCCAACTATCCTGAATTTGTTTGCTGCCAAGTACAAGCTATCTGATCCGAACATCCCCATTGAAAACTCTGAGCTCCAGAGCTTACATACAGATTCTACTGATAATGCTAAGGAGATCAGTTCTCAGTCATGTGAAATTATTTCTCTTGACGTTAATGATGACTTTGTTACTCCCAAGAGAGACATGAGTAAGAACTCTTACATTCCTGAAGATTTTGATCAAGACCGAACTTTTTATCTCCAGATTGATCCTTCTTCGATACTGCCTGAGATTCCATCAATTTTCTATAGAAAATACAAGGAGCAATTGAATCAAAGGATGTATTTCATTGACCTTAATGAAAACCAAGTTGAGGTATTGATTCGAAAGGGTCACTCATGTGGTTACATTTTAGCTGGGTTTGATACTTTGGTTCGATTTTATGGACTTAAAGATGGAGGATGGATGAAAGTTATGTTTATTGGGGAGGATCTTTTCTTAATTATTAAGGTAAAGGATTCGTCAATGACAACTAAGGCATTTTCTTCTCCTCCGGTAAAATTTTTTCTTGAGGTGAAACCTTCATCTGTTGATGTGAATGGGTTCTCTCTCCCCACAAGCCAGATTAATTCAGTTGGCATGTTTCTTGGTGGTGATACTCAATCCCATGGATTACCAAAGCCACCCAATTCAGTATTGAGAGAGAACTATAACTCCTTTTCATATCCTGTTTCTTTTGGCTCAGTATCTACTAATACTTCTCATGGTGTTTACCATACTACATCCAATAATAAAACATTATTAACTGATTCTAGCATCCCTTCTACTCATCCAGAACCAAATTCTGGTACTCATCAAATGATGACCGGTTGCTATGGCCCTATCCACGAGCTTGCTGTTTCCTCTTTAGTGGGCAATAATAATGGTAGCTATCCACTAACAGTCTCCTTTGAATACACTGATCCAATTGCTATAAATATTAGTGGAGAAAGCAATATTTCAACCACTCCTCCTGTTAATCATAATAACTCATTGGATCATATACCCATGTCAATCCCAATGCAAAATGGCTCAAGAAGTGGTGTTCAAATCACCTCAGATTATATTTCTTGCCTCAAGCTTTTGTCTGATCACCAGATTTCAAACAACTATATTATACTTCCTAATGCGTTTGCTAAGAATGCATTTCCAAGTAGGCCTGAGACCATAATGGTTAGGTTGGACAAATTCAGTCCAATGAGGATGGGATTACGATGGAACAATAAAAGGAATCTACAACTATTTTTTACTAAGGGTTGGAAGTTTTTTGCAAAGATGCATAGATTCAAGGAAGGAACATTGTTGAAGTTTTCTGTTTCAACTGGGGATGAAAGTGTGATGTACGATAAAGTTGTGCATTTGTAA 2652 0.3684 MASPFNTLKDLDLAAANQVWRIKIRVIKIWSIIIGEEKFRRPNLELVVMDELGHRIQCSVRNPLRRFFEHDLIEGKVYSIANFSLEPNNQKYKPTTHALRLFFKRETQCRSLEDINFPNNVFHFVPNEMILNHDNHHSHLIDVIGLLTGKGDIIEFTKNGKKSIYMVIELDDMKSKGKIRCTLWEDFANKLVKHMEEQPSTEFIIILQFAKFNMFKGTMGISNTNYNSTLYINADLQEVKEFRQRFIMGNDKASNQLSQIASDVSMSLEQDLISHTPYKPISELKESTEGGIFVTIGTVMSIDTRFGWWYKGCKMCFHSLKEDENSYYCQSCDIYPNIHIPRVSDEMDSASFIIYDKEASKFLEISASELRLKQIAKGYNKDEFPFEINSFRGKKFLFKVSVKLDDINAFQPCKITVLKLTEDPTILNLFAAKYKLSDPNIPIENSELQSLHTDSTDNAKEISSQSCEIISLDVNDDFVTPKRDMSKNSYIPEDFDQDRTFYLQIDPSSILPEIPSIFYRKYKEQLNQRMYFIDLNENQVEVLIRKGHSCGYILAGFDTLVRFYGLKDGGWMKVMFIGEDLFLIIKVKDSSMTTKAFSSPPVKFFLEVKPSSVDVNGFSLPTSQINSVGMFLGGDTQSHGLPKPPNSVLRENYNSFSYPVSFGSVSTNTSHGVYHTTSNNKTLLTDSSIPSTHPEPNSGTHQMMTGCYGPIHELAVSSLVGNNNGSYPLTVSFEYTDPIAINISGESNISTTPPVNHNNSLDHIPMSIPMQNGSRSGVQITSDYISCLKLLSDHQISNNYIILPNAFAKNAFPSRPETIMVRLDKFSPMRMGLRWNNKRNLQLFFTKGWKFFAKMHRFKEGTLLKFSVSTGDESVMYDKVVHL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01891 883 CDD RPA1_DBD_B_like 142 247 - -
Adu09g01891 883 PANTHER BNAC07G49340D PROTEIN 49 481 - -
Adu09g01891 883 SUPERFAMILY DNA-binding pseudobarrel domain 781 869 IPR015300 -
Adu09g01891 883 Gene3D - 269 426 IPR012340 -
Adu09g01891 883 ProSiteProfiles B3 DNA-binding domain profile. 786 883 IPR003340 GO:0003677
Adu09g01891 883 SUPERFAMILY Nucleic acid-binding proteins 135 246 IPR012340 -
Adu09g01891 883 SUPERFAMILY DNA-binding pseudobarrel domain 511 586 IPR015300 -
Adu09g01891 883 Gene3D - 116 257 IPR012340 -
Adu09g01891 883 SUPERFAMILY Nucleic acid-binding proteins 276 423 IPR012340 -
Adu09g01891 883 CDD RPA1_DBD_C 281 439 IPR013955 -
Adu09g01891 883 Pfam Replication factor-A C terminal domain 293 421 IPR013955 -
Adu09g01891 883 Gene3D - 9 115 IPR012340 -
Adu09g01891 883 CDD RPA1_DBD_A_like 21 107 - -
Adu09g01891 883 Pfam B3 DNA binding domain 790 870 IPR003340 GO:0003677
Adu09g01891 883 PANTHER REPLICATION FACTOR A 1, RFA1 49 481 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu09g01891 883 Pfam Domain of unknown function DUF223 45 133 IPR003871 -
Adu09g01891 883 SUPERFAMILY Nucleic acid-binding proteins 5 115 IPR012340 -
Adu09g01891 883 Gene3D - 774 881 IPR015300 -
Adu09g01891 883 CDD B3_DNA 790 866 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01891 Adu-Chr9 94737329 94743158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01891 20 417 Core DNA Replication Machinery Family AT5G08020 25.355 1.84e-17 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu09g01891 Rep_fac-A_C 1.3e-09 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01891 - - adu:107490971 817.379