Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01803 ATGGTGTGGCATTGGGGTTCCCAAATTCCCCCTGTGCAAGGAGGAGGCGAGTGTGAGGGATTTAGAGAGAGAAGAGAGGCACTTTCCCTCTTTCATTGCGCTACCTTCAAGTCTCTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAGGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCACGAACTGGGAGGTTCTACTGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGTAGGCAGGATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAACCATCTCGTGGAATTGGTAAGAAGATTTTTGTTGGCCGACTTCCTCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTATTACTTTTGCCGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCCCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCAAGTGGGAATTTTATGATGAATGGTGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAAGTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGTGAGGCCTTGTCCGTTAAACGGAACATGGTGATGTGGCAAACGGGAATCCAACGTGGCATTCTCATTAGGCCTTCCGTCCCGTTTCAGGTGAAGAAATCTCCATTGAACAACGAAGGTTTCGGTAAGCATTCATTGTTTTCGTTCTTCTTGTTATCAGTTCGTTGGGGTTTGCATGTTGTTGGTGATGAAATGGCAAGTCATATCACGTTTGTATATCACCATTGGGGTTGGTTAGAGAAGGATGCTGATGGTGTGGTGAGGTATAACGAAGGTTTAGTAAGTGTCATCGACAAGGTGCATGTTGATACAGGTAATCTGTTCCTTGTTGAGGGTTTGTTTCTGGATTTAGGGTATACTAGGTACAATGAAGTGTATTGGTTGGAGCCGGAGATGGATTTAGCTAATGGGCTACGAGTTCTGAGAAGGGATGACGATGTGGTTAAGTTGTGTGATGCTGCACTGAAGAATAAAAACATGGTCCACTTATATTTTGAGCATCCTGTTGACGCCGATCCAGAGTTAGTTGATGTAGTTGAGGGACCTCCTTCAGAAGACCAACAAAATCATGACCAGGATCTCCCACAGAATGATGAACATGGAGGACCAGATGATATAGTAGTTGATGGAGCTATCTCAGAAATTCAGGCCACTCATCAAGATGATCCCACACAGTACGAGGAGCAACAGCAACAGGAGGGTGAATCAGTGTTGAGTAATGGGGGGAATGATCAATCGGAGAAAGGTGACGTAGGTACTGATAACGTACCCATTGAAACTGAGGCTGCAACTGTTGAAAATGAGGCACCCAATTTAGGAAGTAACCATGAGACACAAGCTGAACCAGAAGAGGGCCAATCTCAGCGTCAGGAAGCTGAAGGCCGGGGAAGAAAGCGCAGGAAGAAACATGGAAGGCCCCAACCGTCTGGTAGAGCGCAACCTGATGCACAGGACAATGGTGACGAACTGCCAGGTCGTAGGCATCATCCAAGACCTCCTCCATCAGGTCAGAAGATCCTACCACTTAGGGAGGAGAATCAGGCTCCAAGGGTGGTTGTTCCTAACCAAAATGACCCTGATGGTGGGCCAACTGAATATCAGTACCAGTCTGAGGAGTTGCAGACCCCGCCTGGTTCTGATTCTGAGGATGAAAATCCAGTATTCCCGCAGTACAATCTTGATACAAAGTTTGGCAAAATTAGACTAGAGTTAGGTATGGAATATGGGACAATGCAGCAGTTTAAGGATGCAGTCCGGAAGTATAGTATTCAAATGGGCAGAGAGGCATTTTTTCTGAAGGTTGAACCACATAGGTGCAGGGTCATCTGTTACAATGAAACGTGTCCATGGGAGGTTTACTGTGCAAGGAGAAACCAGCCACCTAGTTACCAAATAAAAACACTTGTTGATGAGCATACATGCCCTAGGAGTAATAGAAGTAGGTCAGTCACTTGTAAATGGGTTTCGGAAGAGTTGATAGGTAAGATTAGGATCTGTCCCAATTTGTCCCAGAAAGAGGCTAGAGATATGTTCAAGGTTGGGCACAACTCAAGAACCTGTCCTGATAAGAAGTCGCATGTGGCATCTGAGGAAGCCCCAAACGCACAGCAAGCACCTCAAGATGGTCAGGCAGATGGAGGACATGTTCAGCCACCAACTCAACAAAATTTGCCACATATGGATTTAGAGGACATGTCTGACTTCGAGCAAGAGAGGTTTTGGGAGGAGACCATGGATGCAGTTGAACAAGAGCTCACACAAGGCCATCCACATTCTGAAGCTGATGAAGAGTCTGCTGGAAGGAGAGCTCCTAGGACCAACCCTGGGAGGAGAGCAACCAGATCTAGCAAAGGTCCTGCATCAACTCCTAAAACTCCCTCCAATACTGCTGCTGCCGCTACTACTTCTTCTAGCAGGGAAGGAATCAGGGTAAAGATGCCTATTATGAGGCCCCCATCAGCTCCATGTCCAGCAGCCACTCTAAGGCCCACAGCTCCAAGTCCAGCATCCACAACAAGGCCCACAGCTCCAAGTCCAACAGCCGCTCCAAGGCCCAACCCACCATTTAGGCCCCCACAAATACGGCCCGTCGGACCTACTTCAACTGCTGTCCCTGGTTTAGGAGTTGCAGAAACCACAAGGACTCATGTGGTGTCAAATGAAACCATGAATGGGGCTAGTAAAGCAACAACTTCTAGGTTCTCTAAGTTCATGCCAAATCAGTCTGGTTGA 3411 0.467 MVWHWGSQIPPVQGGGECEGFRERREALSLFHCATFKSLMEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPVGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFITFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSGNFMMNGVGSFGGYGGPMRSYGRMYGSLDFDDWGYGIPSGRPSRADWSEALSVKRNMVMWQTGIQRGILIRPSVPFQVKKSPLNNEGFGKHSLFSFFLLSVRWGLHVVGDEMASHITFVYHHWGWLEKDADGVVRYNEGLVSVIDKVHVDTGNLFLVEGLFLDLGYTRYNEVYWLEPEMDLANGLRVLRRDDDVVKLCDAALKNKNMVHLYFEHPVDADPELVDVVEGPPSEDQQNHDQDLPQNDEHGGPDDIVVDGAISEIQATHQDDPTQYEEQQQQEGESVLSNGGNDQSEKGDVGTDNVPIETEAATVENEAPNLGSNHETQAEPEEGQSQRQEAEGRGRKRRKKHGRPQPSGRAQPDAQDNGDELPGRRHHPRPPPSGQKILPLREENQAPRVVVPNQNDPDGGPTEYQYQSEELQTPPGSDSEDENPVFPQYNLDTKFGKIRLELGMEYGTMQQFKDAVRKYSIQMGREAFFLKVEPHRCRVICYNETCPWEVYCARRNQPPSYQIKTLVDEHTCPRSNRSRSVTCKWVSEELIGKIRICPNLSQKEARDMFKVGHNSRTCPDKKSHVASEEAPNAQQAPQDGQADGGHVQPPTQQNLPHMDLEDMSDFEQERFWEETMDAVEQELTQGHPHSEADEESAGRRAPRTNPGRRATRSSKGPASTPKTPSNTAAAATTSSSREGIRVKMPIMRPPSAPCPAATLRPTAPSPASTTRPTAPSPTAAPRPNPPFRPPQIRPVGPTSTAVPGLGVAETTRTHVVSNETMNGASKATTSRFSKFMPNQSG 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01803 1136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 318 IPR000504 GO:0003723
Adu09g01803 1136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 102 IPR000504 GO:0003723
Adu09g01803 1136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 191 IPR000504 GO:0003723
Adu09g01803 1136 MobiDBLite consensus disorder prediction 660 674 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 613 783 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 907 952 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 568 599 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 923 952 - -
Adu09g01803 1136 SUPERFAMILY RNA-binding domain, RBD 263 363 IPR035979 GO:0003676
Adu09g01803 1136 Pfam MuDR family transposase 793 858 IPR004332 -
Adu09g01803 1136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 119 IPR000504 GO:0003723
Adu09g01803 1136 MobiDBLite consensus disorder prediction 1002 1034 - -
Adu09g01803 1136 Gene3D - 34 124 IPR012677 -
Adu09g01803 1136 Gene3D - 125 213 IPR012677 -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 613 643 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 907 922 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 753 781 - -
Adu09g01803 1136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 207 IPR000504 GO:0003723
Adu09g01803 1136 Gene3D - 262 343 IPR012677 -
Adu09g01803 1136 SUPERFAMILY RNA-binding domain, RBD 128 226 IPR035979 GO:0003676
Adu09g01803 1136 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 42 393 - -
Adu09g01803 1136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 339 IPR000504 GO:0003723
Adu09g01803 1136 MobiDBLite consensus disorder prediction 577 598 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 978 1136 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 1063 1088 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 979 997 - -
Adu09g01803 1136 PANTHER OS01G0945800 PROTEIN 42 393 - -
Adu09g01803 1136 MobiDBLite consensus disorder prediction 1106 1136 - -
Adu09g01803 1136 SMART rrm1_1 132 203 IPR000504 GO:0003723
Adu09g01803 1136 SMART rrm1_1 264 335 IPR000504 GO:0003723
Adu09g01803 1136 SMART rrm1_1 44 115 IPR000504 GO:0003723
Adu09g01803 1136 SUPERFAMILY RNA-binding domain, RBD 41 125 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01803 Adu-Chr9 87935845 87945001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01803 45 332 Eukaryotic Initiation Factors Gene Family AT2G23350 26.510 6.15e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01803 K14411 - gmx:100795240 665.225