Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu09g01757 | ATGAGCTCATCATGGCAACAAGGGAAACTCAGAGAATTTTGCAAGCAGAAAGGAATCCATTTGGCTGCATGGTCACCATTAGGATCTTACACAAAATCATGGGGTACTAATTCAGTTATGGAGAGTCCAATCATTAATGAAATAGCCACTTCTAGACACAAGAGTGTGCCTCAGCACAGATTTTTCATTGAATTTACCTGCAAAGCTTACAAACCTGAAAAGTTTGAGATTTTCTCTAGTAAAGTCACAGATATTGGCATCCGTTTTTTAAAAGGGCTACAAAATCTTGCTCTGTTAAATTTGGAAGGCTGCTTTGTAACAGCTGCATGCTTGGATACTCTTGCAGAGCTTCCAGCCCTCTCGAACTTGAATATCAGTAGATGTAATTTTACTAACAATGGATGTGAAATGTTTTCACTTGATATAATTTTGCTTCTTGCTTCTTGCTTCATCAATTTTGCGGAGTTTGCTTGCCTCTTGTGTCGCAAGGTGTTGAGTGTCCCTGTGACAACTCCTTGTGGCCACAACTTCTGCAAATCCTGTTTGGAGGGTGCCTTTTCTGGCAAAAGCTTTATCAGAAAGAGGGGAAGCGAAGGTGGGTGCACCTTGCGAGCACAGAAGAATGTTATGAAATGCCCTTCATGTTCAATTGACATAGCTGAATTTCTTCAGAACCCAGAGGTAGTACATCATGTCTCTTTCTAA | 705 | 0.4071 | MSSSWQQGKLREFCKQKGIHLAAWSPLGSYTKSWGTNSVMESPIINEIATSRHKSVPQHRFFIEFTCKAYKPEKFEIFSSKVTDIGIRFLKGLQNLALLNLEGCFVTAACLDTLAELPALSNLNISRCNFTNNGCEMFSLDIILLLASCFINFAEFACLLCRKVLSVPVTTPCGHNFCKSCLEGAFSGKSFIRKRGSEGGCTLRAQKNVMKCPSCSIDIAEFLQNPEVVHHVSF | 234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu09g01757 | 234 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 154 | 229 | IPR045134 | - | |
| Adu09g01757 | 234 | PANTHER | FINGER PROTEIN, PUTATIVE-RELATED | 154 | 229 | - | - | |
| Adu09g01757 | 234 | Gene3D | Ribonuclease Inhibitor | 67 | 151 | IPR032675 | - | |
| Adu09g01757 | 234 | SMART | ring_2 | 158 | 215 | IPR001841 | - | |
| Adu09g01757 | 234 | SUPERFAMILY | RNI-like | 81 | 133 | - | - | |
| Adu09g01757 | 234 | SUPERFAMILY | NAD(P)-linked oxidoreductase | 4 | 59 | IPR036812 | - | |
| Adu09g01757 | 234 | SUPERFAMILY | RING/U-box | 154 | 219 | - | - | |
| Adu09g01757 | 234 | ProSitePatterns | Zinc finger RING-type signature. | 173 | 182 | IPR017907 | - | |
| Adu09g01757 | 234 | Gene3D | - | 1 | 66 | IPR036812 | - | |
| Adu09g01757 | 234 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 232 | IPR013083 | - | |
| Adu09g01757 | 234 | ProSiteProfiles | Zinc finger RING-type profile. | 158 | 216 | IPR001841 | - | |
| Adu09g01757 | 234 | Pfam | RING-type zinc-finger | 158 | 213 | IPR027370 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu09g01757 | Adu-Chr9 | 85142919 | 85144849 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu09g01757 | 153 | 228 | C2H2 Transcription Factor Family | AT5G39550 | 60.526 | 4.23e-26 | 104 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu09g01757 | K10638 | - | aip:107639631 | 149.058 |