Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01617 ATGTTGCATCAGCATGGGGACCACATTCAATGTCTTCTAGAGACATCCAATGCCCAAGGCGAGATTATCCACAACATTCTAAACTCAATGGAGAAATATTGCAAGCCTGAAATGGAGTTACGACTTTCTTCGGCGGAAGGCTGTCAAGGACCACAAATAAGAGGTGCGACAGAAAAGGAAAAAAAGCCAACTTGGCCGACGATAATGTCAAGGCAAAGGGGTGGAGCTAGCCGTGCAGGAAAATGTGCAATGGTGATCAGATCCGCTCGCGCACATGAAAATTCCTGTTGTTGTGTTTGTGATAGCGTAAGCTCGAGTTTGAGAGCAAAGATGCTGCTTCTAACGCTCGTGATGAATTTTGTAGGAAGCAACCTGGCTGTGGCTGCGTATATATTCTCCAACGACTTAGACACTAAGGAGCTGTTGGTCACTGATGACCGTTGCCAAGGGGACCATGCTACGTTCTTCACACTGGCTCCTGGACAGGAGGTTGTTGATGATATCTTGACCATGGTTGTGTCCATGCTACCCACGATAACCAAACGCCTAGGTGGTTCTTGCCGCCCACATTTGGGGGAAATTGTGCTTAATTTGGTCAACTACTGCCCAAAGACACTGGACTCCATTCGAGAAAAGTATATGGGGCATGCTAACCACTTGCTAAAAACTCCAAACTACGCCATACCATTTAGAGAATATCCTCCAGGGATAGACCTCAAACATCATGAAAACTCGACCCTATTTCATCAACCTGTTCAGTCCCATTTGGATCACCATTCATACGCTCAAAGCCAGGGACAGCGTCACAGCGACACAACAACACTGGCATCCCATTCAGCCCTCGCGACACAGCAACAGTCGCAGTGCGGTCGCCTTCTCACCTTCCTCCGTTCCGTAGCCGCCGCCTCCGTCGCCTTCCTCGGTAGCCACCGTTTCCTTGCCGTCGCCTTCCAGATTCCGCTGCTGCCATCATCCTCCACACCTTCCTCCACGCTCTCTGAGTCTCTAGAATGGAGATGCCTCAGTTTGATTGATCCCAGGGCAAGTGAGAACATTGGTGTTTCAGAAGTAACAACAACCGAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATTTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACCCAGAAGAACCGCTACTGGATGGTACTCATGGAGCCTCCACCTCATGGTGTCACCTCCAAGTCACAACTCATCGATTATTACGCCAACACTCTACACAAAGTCCTTGCCAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTGCGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTGGTTAGGCCTGATCCGGATTTCAGTTCTTCGAAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACCAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATTGTCGATTATTTTGTTCAAATATTGACCAAGGTGATGGGAAATGAAAAGGATGCTCAGATGTGCATATATCATGTTTCCTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGTTGGTGTGCCTGGTGTCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGCAAATAAGGATTATGAAGGTAATAACTTAGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAACAAGTCAGGCAGCTCCCCTGCAAACGAAAAAGCTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATTATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTATTGAGTACACCACGGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCCAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCGCCAAGGCACAACAGGGGTCATGTCAGGCCATCAGTTTGA 2169 0.4486 MLHQHGDHIQCLLETSNAQGEIIHNILNSMEKYCKPEMELRLSSAEGCQGPQIRGATEKEKKPTWPTIMSRQRGGASRAGKCAMVIRSARAHENSCCCVCDSVSSSLRAKMLLLTLVMNFVGSNLAVAAYIFSNDLDTKELLVTDDRCQGDHATFFTLAPGQEVVDDILTMVVSMLPTITKRLGGSCRPHLGEIVLNLVNYCPKTLDSIREKYMGHANHLLKTPNYAIPFREYPPGIDLKHHENSTLFHQPVQSHLDHHSYAQSQGQRHSDTTTLASHSALATQQQSQCGRLLTFLRSVAAASVAFLGSHRFLAVAFQIPLLPSSSTPSSTLSESLEWRCLSLIDPRASENIGVSEVTTTEIQGLSLPNNRSKHCNLYSFSSSSSRSIAATATLYPSTTQKNRYWMVLMEPPPHGVTSKSQLIDYYANTLHKVLASERDAQMCIYDASCDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSKKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQIVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELVGVPGVLSVQPDNNFESANKDYEGNNLENSLSVQKSFETSQAAPLQTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGQIINGWMIVVDVAKTNPPRHNRGHVRPSV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01617 722 Gene3D - 599 721 IPR012677 -
Adu09g01617 722 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 514 598 IPR037045 -
Adu09g01617 722 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 387 483 IPR037045 -
Adu09g01617 722 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 341 720 - -
Adu09g01617 722 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 341 720 IPR039206 GO:0016554
Adu09g01617 722 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 632 698 IPR000504 GO:0003723
Adu09g01617 722 SUPERFAMILY RNA-binding domain, RBD 621 718 IPR035979 GO:0003676
Adu09g01617 722 MobiDBLite consensus disorder prediction 258 279 - -
Adu09g01617 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 630 708 IPR000504 GO:0003723
Adu09g01617 722 SMART rrm1_1 631 704 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01617 Adu-Chr9 69471537 69481041 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01617 630 712 C2H2 Transcription Factor Family AT2G19380 32.530 1.10e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01617 - - gmx:100791652 505.753